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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8055164   geranylgeranyl transferase type-2 subunit beta 1 
 zma-u.5   100193289   uncharacterized LOC100193289 
 osa-u.5   4346013   geranylgeranyl transferase type-2 subunit beta 1 
 ath-u.5   RGTB1   RAB geranylgeranyl transferase beta subunit 1 
 gma-u.5   100793642   geranylgeranyl transferase type-2 subunit beta-like 
 gma-u.5   100777273   geranylgeranyl transferase type-2 subunit beta 1 
 sly-u.5   101247700   geranylgeranyl transferase type-2 subunit beta 1 
 sly-u.5   101247306   geranylgeranyl transferase type-2 subunit beta 1-like 
 vvi-u.5   100253446   geranylgeranyl transferase type-2 subunit beta 1 
 vvi-u.5   100255737   geranylgeranyl transferase type-2 subunit beta 1 
 ppo-u.5   7481716   geranylgeranyl transferase type-2 subunit beta 1 
 mtr-u.5   112417483   geranylgeranyl transferase type-2 subunit beta 1 
 mtr-u.5   25485517   geranylgeranyl transferase type-2 subunit beta 1 

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Top 50 coexpressed genes to 8055164 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8055164 (sbi-r.1 coexpression data)

CoexMap"8055164"


sbiLOC8055164 | Entrez gene ID : 8055164    
Species sbi zma osa ath gma sly vvi ppo mtr nta bna tae bdi sot bra hvu cit cre ghi
Paralog 1 1 1 1 2 2 2 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0018344 [list] [network] protein geranylgeranylation  (7 genes)  IEA  
GO CC
GO:0005968 [list] [network] Rab-protein geranylgeranyltransferase complex  (3 genes)  IEA  
GO MF
GO:0004663 [list] [network] Rab geranylgeranyltransferase activity  (2 genes)  IEA  
Protein XP_002445890.1 [sequence] [blastp]
XP_021320434.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  cyto_mito 4,  chlo 2,  cyto 1  (predict for XP_002445890.1)
mito 5,  cyto_mito 3,  chlo 2,  cyto 2  (predict for XP_021320434.1)
Subcellular
localization
TargetP
mito 9  (predict for XP_002445890.1)
mito 9  (predict for XP_021320434.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8055164

.
zma-u.5
for
100193289

.
osa-u.5
for
4346013

.
ath-u.5
for
RGTB1

.
gma-u.5
for
100793642

.
gma-u.5
for
100777273

.
sly-u.5
for
101247700

.
sly-u.5
for
101247306

.
vvi-u.5
for
100253446

.
vvi-u.5
for
100255737

.
ppo-u.5
for
7481716

.
mtr-u.5
for
112417483

.
mtr-u.5
for
25485517

.


Ortholog ID: 6550
Species ath gma gma sly sly osa zma bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol RGTB1 LOC100793642 LOC100777273 LOC101247306 LOC101247700 LOC4346013 LOC100193289 LOC103846658 LOC100253446 LOC100255737 LOC7481716 LOC112417483 LOC25485517 LOC123160925 LOC123168368 LOC123410584 LOC107886914 LOC107886840 LOC106372356 LOC106424626 CHLRE_01g053500v5 LOC8055164 LOC102597314 LOC102591180 LOC102626852 LOC100825124 LOC107792959 LOC107816265
Function* RAB geranylgeranyl transferase beta subunit 1 geranylgeranyl transferase type-2 subunit beta-like geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1-like geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 uncharacterized LOC100193289 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 uncharacterized protein geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta-like geranylgeranyl transferase type-2 subunit beta geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1 geranylgeranyl transferase type-2 subunit beta 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 2
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
mtr03018 RNA degradation 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
tae04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 3
hvu00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 4
ghi04016 MAPK signaling pathway - plant 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 3
sot00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00260 Glycine, serine and threonine metabolism 3
sot00470 D-Amino acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00510 N-Glycan biosynthesis 3
bdi04144 Endocytosis 2
bdi00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04136 Autophagy - other 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831094 100793642 100777273 101247306 101247700 4346013 100193289 103846658 100253446 100255737 7481716 112417483 25485517 123160925 123168368 123410584 107886914 107886840 106372356 106424626 5715794 8055164 102597314 102591180 102626852 100825124 107792959 107816265
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