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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8058085   CCR4-NOT transcription complex subunit 1 
 zma-u.5   100502409   uncharacterized LOC100502409 
 zma-u.5   100383837   uncharacterized LOC100383837 
 osa-u.5   4331296   uncharacterized LOC4331296 
 osa-u.5   9272729   uncharacterized LOC9272729 
 ath-u.5   AT1G02080   transcription regulator 
 gma-u.5   100803794   CCR4-NOT transcription complex subunit 1 
 gma-u.5   100783935   CCR4-NOT transcription complex subunit 1 
 sly-u.5   101267935   uncharacterized LOC101267935 
 vvi-u.5   100256945   uncharacterized LOC100256945 
 vvi-u.5   100261590   uncharacterized LOC100261590 
 ppo-u.5   7483819   uncharacterized LOC7483819 
 ppo-u.5   18105172   uncharacterized LOC18105172 
 mtr-u.5   11429926   CCR4-NOT transcription complex subunit 1 

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Top 50 coexpressed genes to 8058085 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8058085 (sbi-r.1 coexpression data)

CoexMap"8058085"


sbiLOC8058085 | Entrez gene ID : 8058085    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 2 1 2 1 2 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (17 genes)  IEA  
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (22 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
GO:0060090 [list] [network] molecular adaptor activity  (186 genes)  IEA  
Protein XP_021310665.1 [sequence] [blastp]
XP_021310669.1 [sequence] [blastp]
XP_021310673.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  golg 2,  cyto_nucl 2,  cyto 1,  cysk_nucl 1,  golg_plas 1  (predict for XP_021310665.1)
nucl 3,  golg 2,  cyto_nucl 2,  cyto 1,  cysk_nucl 1,  golg_plas 1  (predict for XP_021310669.1)
nucl 3,  golg 2,  cyto_nucl 2,  cyto 1,  cysk_nucl 1,  golg_plas 1  (predict for XP_021310673.1)
Subcellular
localization
TargetP
other 6  (predict for XP_021310665.1)
other 6  (predict for XP_021310669.1)
other 6  (predict for XP_021310673.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8058085

.
zma-u.5
for
100502409

.
zma-u.5
for
100383837

.
osa-u.5
for
4331296

.
osa-u.5
for
9272729

.
ath-u.5
for
AT1G02080

.
gma-u.5
for
100803794

.
gma-u.5
for
100783935

.
sly-u.5
for
101267935

.
vvi-u.5
for
100256945

.
vvi-u.5
for
100261590

.
ppo-u.5
for
7483819

.
ppo-u.5
for
18105172

.
mtr-u.5
for
11429926

.


Ortholog ID: 4643
Species ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol AT1G02080 LOC100783935 LOC100803794 LOC101267935 LOC4331296 LOC9272729 LOC100383837 LOC100502409 LOC103850259 LOC103844691 LOC100256945 LOC100261590 LOC18105172 LOC7483819 LOC11429926 LOC123106092 LOC123181624 LOC123438675 LOC123449980 LOC107924016 LOC107945544 LOC106370831 LOC111203605 CHLRE_14g632950v5 LOC8081555 LOC8058085 LOC102583960 LOC102630812 LOC100843991 LOC100840701 LOC107804987 LOC107802598
Function* transcription regulator CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 uncharacterized LOC101267935 uncharacterized LOC4331296 uncharacterized LOC9272729 uncharacterized LOC100383837 uncharacterized LOC100502409 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 uncharacterized LOC100256945 uncharacterized LOC100261590 uncharacterized LOC18105172 uncharacterized LOC7483819 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1-like CCR4-NOT transcription complex subunit 1-like CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1-like CCR4-NOT transcription complex subunit 1 uncharacterized protein CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 uncharacterized LOC102630812 CCR4-NOT transcription complex subunit 1 CCR4-NOT transcription complex subunit 1 uncharacterized LOC107804987 uncharacterized LOC107802598
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03082 ATP-dependent chromatin remodeling 3
gma03015 mRNA surveillance pathway 2
gma04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03082 ATP-dependent chromatin remodeling 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 4
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
bra04120 Ubiquitin mediated proteolysis 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 2
ppo04136 Autophagy - other 2
ppo04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 6
mtr03420 Nucleotide excision repair 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 6
tae03083 Polycomb repressive complex 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi03082 ATP-dependent chromatin remodeling 3
ghi03018 RNA degradation 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04136 Autophagy - other 3
ghi04518 Integrin signaling 3
ghi03082 ATP-dependent chromatin remodeling 3
ghi03018 RNA degradation 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03082 ATP-dependent chromatin remodeling 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 4
bdi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi04120 Ubiquitin mediated proteolysis 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03015 mRNA surveillance pathway 2
nta03460 Fanconi anemia pathway 2
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03430 Mismatch repair 2
nta03015 mRNA surveillance pathway 2
nta03082 ATP-dependent chromatin remodeling 2
nta03460 Fanconi anemia pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839244 100783935 100803794 101267935 4331296 9272729 100383837 100502409 103850259 103844691 100256945 100261590 18105172 7483819 11429926 123106092 123181624 123438675 123449980 107924016 107945544 106370831 111203605 5718333 8081555 8058085 102583960 102630812 100843991 100840701 107804987 107802598
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