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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8058695   uncharacterized LOC8058695 
 zma-u.5   103654496   nucleolin 
 zma-u.5   103646328   RNA binding (RRM/RBD/RNP motifs) family protein 
 zma-u.5   100383360   RNA binding (RRM/RBD/RNP motifs) family protein 
 osa-u.5   4345972   nuclear localization sequence-binding protein 
 osa-u.5   9266635   uncharacterized LOC9266635 
 ath-u.5   AT3G12640   RNA binding (RRM/RBD/RNP motifs) family protein 
 gma-u.5   100817963   nucleolin 2 
 gma-u.5   100787464   uncharacterized LOC100787464 
 sly-u.5   101267843   protein gar2 
 vvi-u.5   100855398   uncharacterized LOC100855398 
 ppo-u.5   7480090   uncharacterized LOC7480090 
 ppo-u.5   7482274   uncharacterized LOC7482274 
 mtr-u.5   11446344   uncharacterized LOC11446344 
 mtr-u.5   11425456   nucleolin 2 

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Top 50 coexpressed genes to 8058695 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8058695 (sbi-r.1 coexpression data)

CoexMap"8058695"


sbiLOC8058695 | Entrez gene ID : 8058695      
Species sbi zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra tae nta bna
Paralog 1 3 2 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043488 [list] [network] regulation of mRNA stability  (37 genes)  IEA  
GO:0006397 [list] [network] mRNA processing  (222 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0008143 [list] [network] poly(A) binding  (3 genes)  IEA  
Protein XP_002446647.2 [sequence] [blastp]
XP_021318752.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for XP_002446647.2)
nucl 10  (predict for XP_021318752.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002446647.2)
other 9  (predict for XP_021318752.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8058695

.
zma-u.5
for
103654496

.
zma-u.5
for
103646328

.
zma-u.5
for
100383360

.
osa-u.5
for
4345972

.
osa-u.5
for
9266635

.
ath-u.5
for
AT3G12640

.
gma-u.5
for
100817963

.
gma-u.5
for
100787464

.
sly-u.5
for
101267843

.
vvi-u.5
for
100855398

.
ppo-u.5
for
7480090

.
ppo-u.5
for
7482274

.
mtr-u.5
for
11446344

.
mtr-u.5
for
11425456

.


Ortholog ID: 5104
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot cit bdi bdi nta nta
Symbol AT3G12640 LOC100787464 LOC100817963 LOC101267843 LOC4345972 LOC9266635 LOC103654496 LOC103646328 LOC103859459 LOC103845348 LOC100855398 LOC7480090 LOC7482274 LOC11446344 LOC11425456 LOC123053602 LOC123151170 LOC123426982 LOC123412421 LOC107926185 LOC107919807 LOC106377479 LOC106351482 LOC8058695 LOC8055188 LOC102596742 LOC102624141 LOC100844096 LOC100837530 LOC107820553 LOC107772006
Function* RNA binding (RRM/RBD/RNP motifs) family protein uncharacterized LOC100787464 nucleolin 2 protein gar2 nuclear localization sequence-binding protein uncharacterized LOC9266635 nucleolin RNA binding (RRM/RBD/RNP motifs) family protein nucleolar protein 12 protein gar2 uncharacterized LOC100855398 uncharacterized LOC7480090 uncharacterized LOC7482274 uncharacterized LOC11446344 nucleolin 2 uncharacterized LOC123053602 nucleolin protein gar2 nucleolin-like uncharacterized LOC107926185 uncharacterized LOC107919807 protein gar2-like protein gar2 uncharacterized LOC8058695 nucleolin 1 uncharacterized LOC102596742 uncharacterized LOC102624141 uncharacterized LOC100844096 uncharacterized LOC100837530 uncharacterized LOC107820553 uncharacterized LOC107772006
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03013 Nucleocytoplasmic transport 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi04016 MAPK signaling pathway - plant 2
ghi04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi04120 Ubiquitin mediated proteolysis 2
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 4
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta00900 Terpenoid backbone biosynthesis 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820444 100787464 100817963 101267843 4345972 9266635 103654496 103646328 103859459 103845348 100855398 7480090 7482274 11446344 11425456 123053602 123151170 123426982 123412421 107926185 107919807 106377479 106351482 8058695 8055188 102596742 102624141 100844096 100837530 107820553 107772006
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