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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8059671   pentatricopeptide repeat-containing protein At5g04810, chloroplastic 
 zma-u.5   100191497   uncharacterized LOC100191497 
 osa-u.5   4329957   pentatricopeptide repeat-containing protein At5g61990, mitochondrial 
 ath-u.5   NFD5   pentatricopeptide (PPR) repeat-containing protein 
 gma-u.5   100801933   pentatricopeptide repeat-containing protein At2g18940, chloroplastic 
 gma-u.5   100794017   uncharacterized LOC100794017 
 sly-u.5   101261632   pentatricopeptide repeat-containing protein CRP1, chloroplastic-like 
 sly-u.5   101261041   pentatricopeptide repeat-containing protein At2g32630-like 
 vvi-u.5   100267767   small ribosomal subunit protein mS77 (rPPR2) 
 ppo-u.5   7477616   pentatricopeptide repeat-containing protein At2g35130 
 mtr-u.5   25482154   uncharacterized LOC25482154 

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Top 50 coexpressed genes to 8059671 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8059671 (sbi-r.1 coexpression data)

CoexMap"8059671"


sbiLOC8059671 | Entrez gene ID : 8059671      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002452434.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 3,  cyto_mito 2,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_002452434.1)
Subcellular
localization
TargetP
mito 6  (predict for XP_002452434.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8059671

.
zma-u.5
for
100191497

.
osa-u.5
for
4329957

.
ath-u.5
for
NFD5

.
gma-u.5
for
100801933

.
gma-u.5
for
100794017

.
sly-u.5
for
101261632

.
sly-u.5
for
101261041

.
vvi-u.5
for
100267767

.
ppo-u.5
for
7477616

.
mtr-u.5
for
25482154

.


Ortholog ID: 9788
Species ath gma gma sly sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol NFD5 LOC100801933 LOC100794017 LOC101261632 LOC101261041 LOC4329957 LOC100191497 LOC103872756 LOC100267767 LOC7477616 LOC25482154 LOC123144792 LOC123127680 LOC123401353 LOC107938908 LOC107935070 LOC125594900 LOC106401174 LOC8059671 LOC102601772 LOC102614427 LOC100834819 LOC107797256 LOC107818540
Function* pentatricopeptide (PPR) repeat-containing protein pentatricopeptide repeat-containing protein At2g18940, chloroplastic uncharacterized LOC100794017 pentatricopeptide repeat-containing protein CRP1, chloroplastic-like pentatricopeptide repeat-containing protein At2g32630-like pentatricopeptide repeat-containing protein At5g61990, mitochondrial uncharacterized LOC100191497 protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial small ribosomal subunit protein mS77 (rPPR2) pentatricopeptide repeat-containing protein At2g35130 uncharacterized LOC25482154 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At1g01970 pentatricopeptide repeat-containing protein At1g74850, chloroplastic pentatricopeptide repeat-containing protein At1g01970 protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial-like protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial pentatricopeptide repeat-containing protein At5g04810, chloroplastic pentatricopeptide repeat-containing protein At5g12100, mitochondrial protein NUCLEAR FUSION DEFECTIVE 5, mitochondrial pentatricopeptide repeat-containing protein At1g01970 uncharacterized LOC107797256 uncharacterized LOC107818540
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 4
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03010 Ribosome 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 6
ppo03018 RNA degradation 4
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00220 Arginine biosynthesis 3
nta00240 Pyrimidine metabolism 3
nta00250 Alanine, aspartate and glutamate metabolism 3
nta01240 Biosynthesis of cofactors 3
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838538 100801933 100794017 101261632 101261041 4329957 100191497 103872756 100267767 7477616 25482154 123144792 123127680 123401353 107938908 107935070 125594900 106401174 8059671 102601772 102614427 100834819 107797256 107818540
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