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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8062834   tetratricopeptide repeat protein SKI3 
 zma-u.5   103644768   tetratricopeptide repeat protein SKI3 
 osa-u.5   4349298   tetratricopeptide repeat protein SKI3 
 ath-u.5   AT1G76630   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100779830   tetratricopeptide repeat protein SKI3 
 sly-u.5   101247817   tetratricopeptide repeat protein SKI3 
 vvi-u.5   100259801   tetratricopeptide repeat protein SKI3 
 ppo-u.5   7474535   tetratricopeptide repeat protein SKI3 
 mtr-u.5   25494462   tetratricopeptide repeat protein SKI3 

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Top 50 coexpressed genes to 8062834 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8062834 (sbi-r.1 coexpression data)

CoexMap"8062834"


sbiLOC8062834 | Entrez gene ID : 8062834    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO CC
GO:0055087 [list] [network] Ski complex  (3 genes)  IEA  
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002464985.2 [sequence] [blastp]
Subcellular
localization
wolf
plas 6,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_002464985.2)
Subcellular
localization
TargetP
other 7  (predict for XP_002464985.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8062834

.
zma-u.5
for
103644768

.
osa-u.5
for
4349298

.
ath-u.5
for
AT1G76630

.
gma-u.5
for
100779830

.
sly-u.5
for
101247817

.
vvi-u.5
for
100259801

.
ppo-u.5
for
7474535

.
mtr-u.5
for
25494462

.


Ortholog ID: 11138
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G76630 LOC100779830 LOC101247817 LOC4349298 LOC103644768 LOC103832123 LOC100259801 LOC7474535 LOC25494462 LOC123127559 LOC123181591 LOC123438108 LOC107905709 LOC107905746 LOC106421669 LOC106427344 CHLRE_12g493550v5 LOC8062834 LOC102592859 LOC102614709 LOC100846927 LOC107823717 LOC107814605
Function* Tetratricopeptide repeat (TPR)-like superfamily protein tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 uncharacterized protein tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3 tetratricopeptide repeat protein SKI3-like tetratricopeptide repeat protein SKI3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03460 Fanconi anemia pathway 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00195 Photosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03022 Basal transcription factors 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 2
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03018 RNA degradation 3
ppo03008 Ribosome biogenesis in eukaryotes 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae00310 Lysine degradation 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03460 Fanconi anemia pathway 2
ghi03018 RNA degradation 2
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03013 Nucleocytoplasmic transport 4
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 6
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03018 RNA degradation 2
sot04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03008 Ribosome biogenesis in eukaryotes 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843996 100779830 101247817 4349298 103644768 103832123 100259801 7474535 25494462 123127559 123181591 123438108 107905709 107905746 106421669 106427344 5726086 8062834 102592859 102614709 100846927 107823717 107814605
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