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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8064050   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 zma-u.5   103638000   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 osa-u.5   4350353   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ath-u.5   AT1G27900   RNA helicase family protein 
 gma-u.5   100793583   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 sly-u.5   101264721   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 vvi-u.5   100245855   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 ppo-u.5   7477037   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 
 mtr-u.5   25501723   probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 

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Top 50 coexpressed genes to 8064050 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8064050 (sbi-r.1 coexpression data)

CoexMap"8064050"


sbiLOC8064050 | Entrez gene ID : 8064050      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO CC
GO:0005622 [list] [network] intracellular anatomical structure  (7500 genes)  IEA  
GO MF
GO:0016887 [list] [network] ATP hydrolysis activity  (434 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002436584.1 [sequence] [blastp]
XP_021305015.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  extr 2,  nucl 1,  vacu 1,  chlo_mito 1,  cysk_nucl 1  (predict for XP_002436584.1)
chlo 4,  extr 3,  nucl 1,  chlo_mito 1  (predict for XP_021305015.1)
Subcellular
localization
TargetP
chlo 6,  other 6  (predict for XP_002436584.1)
chlo 6,  other 6  (predict for XP_021305015.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8064050

.
zma-u.5
for
103638000

.
osa-u.5
for
4350353

.
ath-u.5
for
AT1G27900

.
gma-u.5
for
100793583

.
sly-u.5
for
101264721

.
vvi-u.5
for
100245855

.
ppo-u.5
for
7477037

.
mtr-u.5
for
25501723

.


Ortholog ID: 11069
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT1G27900 LOC100793583 LOC101264721 LOC4350353 LOC103638000 LOC103835367 LOC100245855 LOC7477037 LOC25501723 LOC123086872 LOC123096108 LOC123447760 LOC107886452 LOC107909825 LOC111199777 LOC106389571 CHLRE_12g520150v5 LOC8064050 LOC102578166 LOC102622684 LOC100831991 LOC107775248 LOC107765958
Function* RNA helicase family protein probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 uncharacterized protein probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4 putative pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 5
ath03040 Spliceosome 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03440 Homologous recombination 2
sly04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 8
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03018 RNA degradation 4
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 3
sbi03015 mRNA surveillance pathway 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839683 100793583 101264721 4350353 103638000 103835367 100245855 7477037 25501723 123086872 123096108 123447760 107886452 107909825 111199777 106389571 5722598 8064050 102578166 102622684 100831991 107775248 107765958
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