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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8064155   probable NOT transcription complex subunit VIP2 
 zma-u.5   100281429   uncharacterized LOC100281429 
 zma-u.5   100381661   uncharacterized LOC100381661 
 osa-u.5   4334027   probable NOT transcription complex subunit VIP2 
 osa-u.5   4330931   probable NOT transcription complex subunit VIP2 
 osa-u.5   4339144   probable NOT transcription complex subunit VIP2 
 ath-u.5   VIP2   VIRE2 interacting protein 2 
 ath-u.5   AT1G07705   NOT2 / NOT3 / NOT5 family 
 gma-u.5   100807026   probable NOT transcription complex subunit VIP2 
 gma-u.5   100806559   probable NOT transcription complex subunit VIP2 
 gma-u.5   100783662   probable NOT transcription complex subunit VIP2 
 sly-u.5   101258724   probable NOT transcription complex subunit VIP2 
 sly-u.5   101256781   probable NOT transcription complex subunit VIP2 
 vvi-u.5   109123481   probable NOT transcription complex subunit VIP2 
 vvi-u.5   100263354   probable NOT transcription complex subunit VIP2 
 vvi-u.5   100248449   probable NOT transcription complex subunit VIP2 
 ppo-u.5   18095311   probable NOT transcription complex subunit VIP2 
 ppo-u.5   18107269   probable NOT transcription complex subunit VIP2 
 mtr-u.5   11418070   probable NOT transcription complex subunit VIP2 
 mtr-u.5   25492462   probable NOT transcription complex subunit VIP2 

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Top 50 coexpressed genes to 8064155 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8064155 (sbi-r.1 coexpression data)

CoexMap"8064155"


sbiLOC8064155 | Entrez gene ID : 8064155    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 3 2 3 2 3 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0000289 [list] [network] nuclear-transcribed mRNA poly(A) tail shortening  (5 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1596 genes)  IEA  
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (22 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
Protein XP_002439980.1 [sequence] [blastp]
XP_021303495.1 [sequence] [blastp]
XP_021303496.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 3,  vacu 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_002439980.1)
chlo 4,  nucl 3,  vacu 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_021303495.1)
chlo 4,  nucl 3,  pero 2,  vacu 1,  cyto_nucl 1,  cysk_nucl 1,  nucl_plas 1  (predict for XP_021303496.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002439980.1)
chlo 8  (predict for XP_021303495.1)
chlo 8  (predict for XP_021303496.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8064155

.
zma-u.5
for
100281429

.
zma-u.5
for
100381661

.
osa-u.5
for
4334027

.
osa-u.5
for
4330931

.
osa-u.5
for
4339144

.
ath-u.5
for
VIP2

.
ath-u.5
for
AT1G07705

.
gma-u.5
for
100807026

.
gma-u.5
for
100806559

.
gma-u.5
for
100783662

.
sly-u.5
for
101258724

.
sly-u.5
for
101256781

.
vvi-u.5
for
109123481

.
vvi-u.5
for
100263354

.
vvi-u.5
for
100248449

.
ppo-u.5
for
18095311

.
ppo-u.5
for
18107269

.
mtr-u.5
for
11418070

.
mtr-u.5
for
25492462

.


Ortholog ID: 2513
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT1G07705 VIP2 LOC100783662 LOC100807026 LOC101256781 LOC101258724 LOC4330931 LOC4339144 LOC100281429 LOC100381661 LOC103871522 LOC103851558 LOC100248449 LOC109123481 LOC18107269 LOC18095311 LOC11418070 LOC25492462 LOC123137281 LOC123140151 LOC123406341 LOC121212693 LOC107931419 LOC106385420 LOC106415647 CHLRE_06g309050v5 LOC8081948 LOC8064155 LOC102579065 LOC102585273 LOC102577999 LOC100844143 LOC100843655 LOC107813402 LOC107820585
Function* NOT2 / NOT3 / NOT5 family VIRE2 interacting protein 2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 uncharacterized LOC100281429 uncharacterized LOC100381661 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 uncharacterized protein probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 probable NOT transcription complex subunit VIP2 putative NOT transcription complex subunit VIP2 putative NOT transcription complex subunit VIP2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
ath03040 Spliceosome 3
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04120 Ubiquitin mediated proteolysis 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 5
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00190 Oxidative phosphorylation 3
bra00020 Citrate cycle (TCA cycle) 2
bra01200 Carbon metabolism 2
bra00541 Biosynthesis of various nucleotide sugars 2
bra01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 5
ppo00510 N-Glycan biosynthesis 4
ppo00513 Various types of N-glycan biosynthesis 4
ppo00020 Citrate cycle (TCA cycle) 3
ppo01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 3
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03083 Polycomb repressive complex 3
tae03250 Viral life cycle - HIV-1 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
ghi00510 N-Glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
bdi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837284 836092 100783662 100807026 101256781 101258724 4330931 4339144 100281429 100381661 103871522 103851558 100248449 109123481 18107269 18095311 11418070 25492462 123137281 123140151 123406341 121212693 107931419 106385420 106415647 5716830 8081948 8064155 102579065 102585273 102577999 100844143 100843655 107813402 107820585
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