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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8066946   phosphoglucan phosphatase LSF2, chloroplastic 
 zma-u.5   732726   uncharacterized LOC732726 
 osa-u.5   4349591   phosphoglucan phosphatase LSF2, chloroplastic 
 osa-u.5   4351304   phosphoglucan phosphatase LSF2, chloroplastic 
 ath-u.5   LSF2   dual specificity protein phosphatase (DsPTP1) family protein 
 gma-u.5   100805592   phosphoglucan phosphatase LSF2, chloroplastic 
 gma-u.5   100787079   phosphoglucan phosphatase LSF2, chloroplastic 
 sly-u.5   101259052   phosphoglucan phosphatase LSF2, chloroplastic 
 vvi-u.5   100251903   phosphoglucan phosphatase LSF2, chloroplastic 
 ppo-u.5   7453571   phosphoglucan phosphatase LSF2, chloroplastic 
 mtr-u.5   25489853   phosphoglucan phosphatase LSF2, chloroplastic 

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Top 50 coexpressed genes to 8066946 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8066946 (sbi-r.1 coexpression data)

CoexMap"8066946"


sbiLOC8066946 | Entrez gene ID : 8066946      
Species sbi zma osa ath gma sly vvi ppo mtr cre ghi cit hvu bdi sot bra tae nta bna
Paralog 1 1 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005983 [list] [network] starch catabolic process  (3 genes)  IEA  
GO:0006470 [list] [network] protein dephosphorylation  (121 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (560 genes)  IEA  
GO MF
GO:2001070 [list] [network] starch binding  (13 genes)  IEA  
GO:0008138 [list] [network] protein tyrosine/serine/threonine phosphatase activity  (17 genes)  IEA  
GO:0019203 [list] [network] carbohydrate phosphatase activity  (25 genes)  IEA  
Protein XP_002441816.1 [sequence] [blastp]
XP_021302397.1 [sequence] [blastp]
XP_021302398.1 [sequence] [blastp]
XP_021302399.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_002441816.1)
chlo 9,  mito 1  (predict for XP_021302397.1)
chlo 9,  mito 1  (predict for XP_021302398.1)
chlo 9,  mito 1  (predict for XP_021302399.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002441816.1)
chlo 9  (predict for XP_021302397.1)
chlo 9  (predict for XP_021302398.1)
chlo 9  (predict for XP_021302399.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8066946

.
zma-u.5
for
732726

.
osa-u.5
for
4349591

.
osa-u.5
for
4351304

.
ath-u.5
for
LSF2

.
gma-u.5
for
100805592

.
gma-u.5
for
100787079

.
sly-u.5
for
101259052

.
vvi-u.5
for
100251903

.
ppo-u.5
for
7453571

.
mtr-u.5
for
25489853

.


Ortholog ID: 10755
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi nta
Symbol LSF2 LOC100787079 LOC100805592 LOC101259052 LOC4351304 LOC4349591 LOC732726 LOC103870419 LOC100251903 LOC7453571 LOC25489853 LOC123103172 LOC123111368 LOC123397925 LOC107904743 LOC106452641 LOC106452723 CHLRE_09g403050v5 LOC8066946 LOC102605583 LOC102622989 LOC100840963 LOC107780579
Function* dual specificity protein phosphatase (DsPTP1) family protein phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic uncharacterized LOC732726 phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic uncharacterized protein phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic phosphoglucan phosphatase LSF2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04712 Circadian rhythm - plant 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00220 Arginine biosynthesis 2
osa01210 2-Oxocarboxylic acid metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 4
osa00230 Purine metabolism 4
osa00220 Arginine biosynthesis 3
osa01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 8
zma01240 Biosynthesis of cofactors 6
zma00010 Glycolysis / Gluconeogenesis 4
zma00052 Galactose metabolism 4
zma00520 Amino sugar and nucleotide sugar metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 4
bra04517 IgSF CAM signaling 4
bra04814 Motor proteins 4
bra00620 Pyruvate metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00650 Butanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 5
tae00010 Glycolysis / Gluconeogenesis 3
tae00030 Pentose phosphate pathway 3
tae00051 Fructose and mannose metabolism 3
tae00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 6
ghi04016 MAPK signaling pathway - plant 2
ghi04075 Plant hormone signal transduction 2
ghi00010 Glycolysis / Gluconeogenesis 2
ghi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot04120 Ubiquitin mediated proteolysis 3
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00020 Citrate cycle (TCA cycle) 2
bdi00620 Pyruvate metabolism 2
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi01200 Carbon metabolism 2
bdi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
nta00480 Glutathione metabolism 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820265 100787079 100805592 101259052 4351304 4349591 732726 103870419 100251903 7453571 25489853 123103172 123111368 123397925 107904743 106452641 106452723 5720738 8066946 102605583 102622989 100840963 107780579
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