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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8066977   endonuclease III homolog 1, chloroplastic 
 zma-u.5   103640763   endonuclease III homolog 1, chloroplastic 
 osa-u.5   9268162   endonuclease III homolog 1, chloroplastic 
 ath-u.5   ATNTH1   DNA glycosylase superfamily protein 
 ath-u.5   NTH2   endonuclease III 2 
 gma-u.5   100818398   endonuclease III homolog 1, chloroplastic 
 gma-u.5   100805799   endonuclease III homolog 2, chloroplastic 
 sly-u.5   101262253   endonuclease III homolog 2, chloroplastic-like 
 sly-u.5   101248783   endonuclease III homolog 1, chloroplastic 
 vvi-u.5   100268015   endonuclease III homolog 1, chloroplastic 
 ppo-u.5   7469594   endonuclease III homolog 1, chloroplastic 
 mtr-u.5   11434742   endonuclease III homolog 2, chloroplastic 
 mtr-u.5   25492651   endonuclease III homolog 1, chloroplastic 

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Top 50 coexpressed genes to 8066977 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8066977 (sbi-r.1 coexpression data)

CoexMap"8066977"


sbiLOC8066977 | Entrez gene ID : 8066977    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 2 2 2 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03410 [list] [network] Base excision repair (51 genes)
GO BP
GO:0006285 [list] [network] base-excision repair, AP site formation  (5 genes)  IEA  
GO:0006284 [list] [network] base-excision repair  (28 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (48 genes)  IEA  
GO CC
GO:0042644 [list] [network] chloroplast nucleoid  (6 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0000703 [list] [network] oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity  (1 genes)  IEA  
GO:0003906 [list] [network] DNA-(apurinic or apyrimidinic site) endonuclease activity  (6 genes)  IEA  
GO:0051539 [list] [network] 4 iron, 4 sulfur cluster binding  (26 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1849 genes)  IEA  
Protein XP_002442817.1 [sequence] [blastp]
XP_021302260.1 [sequence] [blastp]
XP_021302261.1 [sequence] [blastp]
XP_021302262.1 [sequence] [blastp]
XP_021302263.1 [sequence] [blastp]
XP_021302264.1 [sequence] [blastp]
XP_021302265.1 [sequence] [blastp]
XP_021302267.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  chlo_mito 4,  mito 1,  cyto_mito 1  (predict for XP_002442817.1)
chlo 4,  cyto 1,  mito 1,  extr 1,  plas 1,  cysk 1,  cyto_nucl 1,  cyto_mito 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_021302260.1)
chlo 4,  cyto 2,  mito 1,  extr 1,  cyto_nucl 1,  cyto_plas 1  (predict for XP_021302261.1)
chlo 7,  chlo_mito 4,  mito 1,  cyto_mito 1  (predict for XP_021302262.1)
chlo 7,  chlo_mito 5,  mito 1,  cyto_mito 1  (predict for XP_021302263.1)
chlo 4,  cyto 1,  extr 1,  cysk 1,  mito 1,  plas 1,  cyto_nucl 1,  cysk_nucl 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_021302264.1)
chlo 4,  cyto 1,  extr 1,  nucl 1,  mito 1,  plas 1,  cysk 1,  cysk_nucl 1,  nucl_plas 1,  cyto_pero 1,  cysk_plas 1,  mito_plas 1,  cyto_E.R. 1  (predict for XP_021302265.1)
chlo 7,  chlo_mito 4,  mito 1,  cyto_mito 1  (predict for XP_021302267.1)
Subcellular
localization
TargetP
mito 8,  chlo 6  (predict for XP_002442817.1)
other 5  (predict for XP_021302260.1)
other 5  (predict for XP_021302261.1)
mito 8,  chlo 6  (predict for XP_021302262.1)
mito 8,  chlo 6  (predict for XP_021302263.1)
other 5  (predict for XP_021302264.1)
other 5  (predict for XP_021302265.1)
mito 8,  chlo 6  (predict for XP_021302267.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8066977

.
zma-u.5
for
103640763

.
osa-u.5
for
9268162

.
ath-u.5
for
ATNTH1

.
ath-u.5
for
NTH2

.
gma-u.5
for
100818398

.
gma-u.5
for
100805799

.
sly-u.5
for
101262253

.
sly-u.5
for
101248783

.
vvi-u.5
for
100268015

.
ppo-u.5
for
7469594

.
mtr-u.5
for
11434742

.
mtr-u.5
for
25492651

.


Ortholog ID: 5694
Species ath ath gma gma sly sly osa zma bra bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol ATNTH1 NTH2 LOC100805799 LOC100818398 LOC101248783 LOC101262253 LOC9268162 LOC103640763 LOC103857374 LOC103843583 LOC100268015 LOC7469594 LOC25492651 LOC11434742 LOC123096165 LOC123167902 LOC123450246 LOC107903783 LOC107910452 LOC106437740 LOC106445698 CHLRE_17g732050v5 LOC8066977 LOC102595176 LOC102596980 LOC102617365 LOC102616863 LOC100836192 LOC107798302 LOC107814431
Function* DNA glycosylase superfamily protein endonuclease III 2 endonuclease III homolog 2, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 2, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 2, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 2, chloroplastic endonuclease III homolog 1, chloroplastic uncharacterized LOC123167902 endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic uncharacterized protein endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic-like endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic endonuclease III homolog 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04146 Peroxisome 2
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
ath01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma00908 Zeatin biosynthesis 2
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01240 Biosynthesis of cofactors 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00900 Terpenoid backbone biosynthesis 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03410 Base excision repair 3
tae00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna00561 Glycerolipid metabolism 3
bna00564 Glycerophospholipid metabolism 3
bna03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817703 837100 100805799 100818398 101248783 101262253 9268162 103640763 103857374 103843583 100268015 7469594 25492651 11434742 123096165 123167902 123450246 107903783 107910452 106437740 106445698 5727040 8066977 102595176 102596980 102617365 102616863 100836192 107798302 107814431
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