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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8068362   transcription factor bHLH66 
 zma-u.5   103637976   transcription factor LRL3 
 zma-u.5   100284814   uncharacterized LOC100284814 
 osa-u.5   9272478   bHLH transcription factor RHL1 
 osa-u.5   107275733   transcription factor LRL3 
 osa-u.5   107277582   bHLH transcription factor RHL1 
 ath-u.5   LRL1   LJRHL1-like 1 
 ath-u.5   LRL2   LJRHL1-like 2 
 ath-u.5   LRL3   LJRHL1-like 3 
 gma-u.5   100807286   bHLH transcription factor RHL1 
 gma-u.5   100806899   bHLH transcription factor RHL1 
 gma-u.5   100801457   bHLH transcription factor RHL1 
 sly-u.5   101244057   bHLH transcription factor RHL1 
 sly-u.5   101263038   bHLH transcription factor RHL1-like 
 vvi-u.5   100243222   bHLH transcription factor RHL1 
 ppo-u.5   7489455   bHLH transcription factor RHL1 
 ppo-u.5   7465950   bHLH transcription factor RHL1 
 mtr-u.5   11441077   bHLH transcription factor RHL1 

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Top 50 coexpressed genes to 8068362 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8068362 (sbi-r.1 coexpression data)

CoexMap"8068362"


sbiLOC8068362 | Entrez gene ID : 8068362    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 3 3 3 2 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (365 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (203 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (251 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (479 genes)  IEA  
Protein XP_021307995.1 [sequence] [blastp]
XP_021307996.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_021307995.1)
nucl 7,  cyto 2  (predict for XP_021307996.1)
Subcellular
localization
TargetP
other 7  (predict for XP_021307995.1)
other 7  (predict for XP_021307996.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8068362

.
zma-u.5
for
103637976

.
zma-u.5
for
100284814

.
osa-u.5
for
9272478

.
osa-u.5
for
107275733

.
osa-u.5
for
107277582

.
ath-u.5
for
LRL1

.
ath-u.5
for
LRL2

.
ath-u.5
for
LRL3

.
gma-u.5
for
100807286

.
gma-u.5
for
100806899

.
gma-u.5
for
100801457

.
sly-u.5
for
101244057

.
sly-u.5
for
101263038

.
vvi-u.5
for
100243222

.
ppo-u.5
for
7489455

.
ppo-u.5
for
7465950

.
mtr-u.5
for
11441077

.


Ortholog ID: 1959
Species ath ath gma gma sly sly osa osa zma vvi ppo ppo mtr tae hvu hvu ghi ghi bna sbi sbi sot sot cit bdi nta nta
Symbol LRL2 LRL1 LOC100807286 LOC100801457 LOC101244057 LOC101263038 LOC107277582 LOC9272478 LOC103654176 LOC100243222 LOC7489455 LOC7465950 LOC11441077 LOC123139121 LOC123410713 LOC123399014 LOC121230621 LOC107906907 LOC106412309 LOC8068362 LOC8081987 LOC102592581 LOC102592871 LOC102625435 LOC100826168 LOC107769448 LOC107783787
Function* LJRHL1-like 2 LJRHL1-like 1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1-like bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 bHLH transcription factor RHL1 transcription factor LRL3 transcription factor LRL3-like bHLH transcription factor RHL1-like bHLH transcription factor RHL1 bHLH transcription factor RHL1 transcription factor LRL1 transcription factor bHLH66 transcription factor bHLH82 transcription factor bHLH66 transcription factor bHLH66 bHLH transcription factor RHL1 transcription factor bHLH66 bHLH transcription factor RHL1 bHLH transcription factor RHL1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath01200 Carbon metabolism 10
ath00010 Glycolysis / Gluconeogenesis 7
ath00710 Carbon fixation by Calvin cycle 6
ath00030 Pentose phosphate pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
gma01230 Biosynthesis of amino acids 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00790 Folate biosynthesis 2
sly00240 Pyrimidine metabolism 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 6
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829223 816961 100807286 100801457 101244057 101263038 107277582 9272478 103654176 100243222 7489455 7465950 11441077 123139121 123410713 123399014 121230621 107906907 106412309 8068362 8081987 102592581 102592871 102625435 100826168 107769448 107783787
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