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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8070895   pre-mRNA-processing-splicing factor 8A 
 zma-u.5   103629533   pre-mRNA-processing-splicing factor 8A 
 zma-u.5   103638016   pre-mRNA-processing-splicing factor 8A 
 osa-u.5   4337900   pre-mRNA-processing-splicing factor 8A 
 osa-u.5   4340248   pre-mRNA-processing-splicing factor 8A 
 ath-u.5   AT4G38780   pre-mRNA-processing-splicing factor-like protein 
 ath-u.5   SUS2   Pre-mRNA-processing-splicing factor 
 gma-u.5   100814404   pre-mRNA-processing-splicing factor 8A 
 gma-u.5   100804026   pre-mRNA-processing-splicing factor 8A 
 sly-u.5   101261833   pre-mRNA-processing-splicing factor 8A 
 vvi-u.5   100257584   pre-mRNA-processing-splicing factor 8A 
 ppo-u.5   18096703   pre-mRNA-processing-splicing factor 8A 
 mtr-u.5   11425902   pre-mRNA-processing-splicing factor 8A 
 mtr-u.5   11421219   pre-mRNA-processing-splicing factor 8A 

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Top 50 coexpressed genes to 8070895 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8070895 (sbi-r.1 coexpression data)

CoexMap"8070895"


sbiLOC8070895 | Entrez gene ID : 8070895    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 2 2 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000244 [list] [network] spliceosomal tri-snRNP complex assembly  (4 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0005682 [list] [network] U5 snRNP  (19 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (61 genes)  IEA  
GO MF
GO:0030623 [list] [network] U5 snRNA binding  (2 genes)  IEA  
GO:0097157 [list] [network] pre-mRNA intronic binding  (2 genes)  IEA  
GO:0030620 [list] [network] U2 snRNA binding  (5 genes)  IEA  
GO:0030619 [list] [network] U1 snRNA binding  (6 genes)  IEA  
GO:0017070 [list] [network] U6 snRNA binding  (9 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (77 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_021305127.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  plas 1,  mito_plas 1,  extr 1,  vacu 1,  cysk_nucl 1  (predict for XP_021305127.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_021305127.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8070895

.
zma-u.5
for
103629533

.
zma-u.5
for
103638016

.
osa-u.5
for
4337900

.
osa-u.5
for
4340248

.
ath-u.5
for
AT4G38780

.
ath-u.5
for
SUS2

.
gma-u.5
for
100814404

.
gma-u.5
for
100804026

.
sly-u.5
for
101261833

.
vvi-u.5
for
100257584

.
ppo-u.5
for
18096703

.
mtr-u.5
for
11425902

.
mtr-u.5
for
11421219

.


Ortholog ID: 4968
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol SUS2 AT4G38780 LOC100814404 LOC100804026 LOC101261833 LOC4340248 LOC4337900 LOC103638016 LOC103629533 LOC103865106 LOC103857797 LOC100257584 LOC18096703 LOC11421219 LOC11425902 LOC123103608 LOC123111825 LOC123407132 LOC123395320 LOC107906455 LOC107914156 LOC106450973 LOC106437553 CHLRE_01g016050v5 LOC8070895 LOC102586113 LOC102619923 LOC100846384 LOC107813473 LOC107822977
Function* Pre-mRNA-processing-splicing factor pre-mRNA-processing-splicing factor-like protein pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A-like pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A-like pre-mRNA-processing-splicing factor 8A-like uncharacterized protein pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8-like pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A pre-mRNA-processing-splicing factor 8A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 3
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03410 Base excision repair 3
ath03440 Homologous recombination 3
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 5
gma03040 Spliceosome 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03040 Spliceosome 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 6
bra03040 Spliceosome 5
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
vvi03040 Spliceosome 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo04120 Ubiquitin mediated proteolysis 3
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
ghi03082 ATP-dependent chromatin remodeling 4
ghi04814 Motor proteins 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03082 ATP-dependent chromatin remodeling 4
ghi00230 Purine metabolism 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 15
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 15
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
cre03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03013 Nucleocytoplasmic transport 2
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit04120 Ubiquitin mediated proteolysis 2
cit00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04142 Lysosome 4
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
nta04144 Endocytosis 2
nta05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
nta03018 RNA degradation 2
nta04142 Lysosome 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844347 830033 100814404 100804026 101261833 4340248 4337900 103638016 103629533 103865106 103857797 100257584 18096703 11421219 11425902 123103608 123111825 123407132 123395320 107906455 107914156 106450973 106437553 5715121 8070895 102586113 102619923 100846384 107813473 107822977
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