Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8072335   CCR4-NOT transcription complex subunit 9 
 zma-u.5   100193338   uncharacterized LOC100193338 
 osa-u.5   9272009   uncharacterized LOC9272009 
 ath-u.5   AT3G20800   Cell differentiation, Rcd1-like protein 
 ath-u.5   AT5G12980   Cell differentiation, Rcd1-like protein 
 gma-u.5   100792784   CCR4-NOT transcription complex subunit 9 
 gma-u.5   100784529   CCR4-NOT transcription complex subunit 9 
 gma-u.5   100801266   CCR4-NOT transcription complex subunit 9 
 sly-u.5   101265516   uncharacterized LOC101265516 
 sly-u.5   101263473   uncharacterized LOC101263473 
 sly-u.5   101260874   uncharacterized LOC101260874 
 vvi-u.5   100265941   uncharacterized LOC100265941 
 ppo-u.5   7483613   uncharacterized LOC7483613 
 ppo-u.5   7470819   uncharacterized LOC7470819 
 mtr-u.5   25488987   CCR4-NOT transcription complex subunit 9 

close


Top 50 coexpressed genes to 8072335 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 8072335 (sbi-r.1 coexpression data)

CoexMap"8072335"


sbiLOC8072335 | Entrez gene ID : 8072335      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 2 3 3 1 2 1 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0017148 [list] [network] negative regulation of translation  (22 genes)  IEA  
GO:0006402 [list] [network] mRNA catabolic process  (69 genes)  IEA  
GO CC
GO:0030015 [list] [network] CCR4-NOT core complex  (22 genes)  IEA  
GO:0030014 [list] [network] CCR4-NOT complex  (31 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
Protein XP_002448518.1 [sequence] [blastp]
XP_021319585.1 [sequence] [blastp]
Subcellular
localization
wolf
extr 4,  nucl 2,  chlo 1,  cyto 1,  nucl_plas 1  (predict for XP_002448518.1)
extr 4,  nucl 2,  chlo 1,  cyto 1,  nucl_plas 1  (predict for XP_021319585.1)
Subcellular
localization
TargetP
chlo 6,  other 5  (predict for XP_002448518.1)
chlo 6,  other 5  (predict for XP_021319585.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8072335

.
zma-u.5
for
100193338

.
osa-u.5
for
9272009

.
ath-u.5
for
AT3G20800

.
ath-u.5
for
AT5G12980

.
gma-u.5
for
100792784

.
gma-u.5
for
100784529

.
gma-u.5
for
100801266

.
sly-u.5
for
101265516

.
sly-u.5
for
101263473

.
sly-u.5
for
101260874

.
vvi-u.5
for
100265941

.
ppo-u.5
for
7483613

.
ppo-u.5
for
7470819

.
mtr-u.5
for
25488987

.


Ortholog ID: 3107
Species ath ath gma sly sly osa zma bra bra vvi ppo mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit bdi bdi nta nta
Symbol AT3G20800 AT5G12980 LOC100784529 LOC101260874 LOC101265516 LOC9272009 LOC100193338 LOC103835726 LOC103869276 LOC100265941 LOC7483613 LOC25488987 LOC123105303 LOC123046458 LOC123427622 LOC123431497 LOC107889925 LOC121225310 LOC106401806 LOC125603095 CHLRE_12g540350v5 CHLRE_12g540400v5 LOC8072335 LOC102595126 LOC102586245 LOC102618037 LOC100837139 LOC100841771 LOC107787317 LOC107769964
Function* Cell differentiation, Rcd1-like protein Cell differentiation, Rcd1-like protein CCR4-NOT transcription complex subunit 9 uncharacterized LOC101260874 uncharacterized LOC101265516 uncharacterized LOC9272009 uncharacterized LOC100193338 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 uncharacterized LOC100265941 uncharacterized LOC7483613 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9-like CCR4-NOT transcription complex subunit 9-like CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9 CCR4-NOT transcription complex subunit 9-like uncharacterized protein uncharacterized protein CCR4-NOT transcription complex subunit 9 cell differentiation protein RCD1 homolog cell differentiation protein RCD1 homolog uncharacterized LOC102618037 cell differentiation protein rcd1 CCR4-NOT transcription complex subunit 9 uncharacterized LOC107787317 uncharacterized LOC107769964
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 3
ath03050 Proteasome 3
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00860 Porphyrin metabolism 4
ath00053 Ascorbate and aldarate metabolism 2
ath00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00190 Oxidative phosphorylation 7
gma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 4
sly04141 Protein processing in endoplasmic reticulum 3
sly04130 SNARE interactions in vesicular transport 2
sly03083 Polycomb repressive complex 2
sly00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 8
osa03040 Spliceosome 2
osa04120 Ubiquitin mediated proteolysis 2
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
zma03015 mRNA surveillance pathway 2
zma04136 Autophagy - other 2
zma04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04142 Lysosome 2
bra04626 Plant-pathogen interaction 2
bra00190 Oxidative phosphorylation 2
bra04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo00510 N-Glycan biosynthesis 2
ppo00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00190 Oxidative phosphorylation 9
mtr00710 Carbon fixation by Calvin cycle 4
mtr01200 Carbon metabolism 4
mtr00010 Glycolysis / Gluconeogenesis 3
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
tae04136 Autophagy - other 3
tae04382 Cornified envelope formation 3
tae00310 Lysine degradation 3
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre03013 Nucleocytoplasmic transport 2
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 3
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 7
bdi03060 Protein export 4
bdi00510 N-Glycan biosynthesis 2
bdi00513 Various types of N-glycan biosynthesis 2
bdi04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00190 Oxidative phosphorylation 4
nta00730 Thiamine metabolism 2
nta01240 Biosynthesis of cofactors 2
nta03018 RNA degradation 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821628 831138 100784529 101260874 101265516 9272009 100193338 103835726 103869276 100265941 7483613 25488987 123105303 123046458 123427622 123431497 107889925 121225310 106401806 125603095 5719484 5719485 8072335 102595126 102586245 102618037 100837139 100841771 107787317 107769964
The preparation time of this page was 0.1 [sec].