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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8072548   exosome complex component RRP41 homolog 
 zma-u.5   100192964   uncharacterized LOC100192964 
 osa-u.5   4346519   exosome complex component RRP41 homolog 
 ath-u.5   RRP41   3'-5'-exoribonuclease family protein 
 gma-u.5   100818324   exosome complex component RRP41 homolog 
 gma-u.5   100782953   exosome complex component RRP41 homolog 
 sly-u.5   101250449   exosome complex component RRP41 homolog 
 vvi-u.5   100265488   exosome complex component RRP41 homolog 
 ppo-u.5   7492754   exosome complex component RRP41 homolog 
 mtr-u.5   11431768   exosome complex component RRP41 homolog 

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Top 50 coexpressed genes to 8072548 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8072548 (sbi-r.1 coexpression data)

CoexMap"8072548"


sbiLOC8072548 | Entrez gene ID : 8072548      
Species sbi zma osa ath gma sly vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi cre
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0016075 [list] [network] rRNA catabolic process  (6 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (9 genes)  IEA  
GO:0071051 [list] [network] poly(A)-dependent snoRNA 3'-end processing  (10 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (11 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (12 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (17 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (194 genes)  IEA  
GO MF
Protein XP_002439921.1 [sequence] [blastp]
XP_021302708.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 7,  chlo 1,  mito 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for XP_002439921.1)
cyto 7,  chlo 1,  mito 1,  pero 1,  cysk 1,  chlo_mito 1  (predict for XP_021302708.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002439921.1)
other 9  (predict for XP_021302708.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8072548

.
zma-u.5
for
100192964

.
osa-u.5
for
4346519

.
ath-u.5
for
RRP41

.
gma-u.5
for
100818324

.
gma-u.5
for
100782953

.
sly-u.5
for
101250449

.
vvi-u.5
for
100265488

.
ppo-u.5
for
7492754

.
mtr-u.5
for
11431768

.


Ortholog ID: 7264
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol RRP41 LOC100782953 LOC100818324 LOC101250449 LOC4346519 LOC100192964 LOC103830312 LOC103841986 LOC100265488 LOC7492754 LOC11431768 LOC123067730 LOC123040610 LOC123449937 LOC107923046 LOC107909774 LOC106353278 LOC106402471 CHLRE_06g284500v5 LOC8063580 LOC8072548 LOC102597680 LOC102622275 LOC100828383 LOC107819315 LOC107773161
Function* 3'-5'-exoribonuclease family protein exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog uncharacterized LOC100192964 exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog uncharacterized protein exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog exosome complex component RRP41 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 2
gma04136 Autophagy - other 2
gma04382 Cornified envelope formation 2
gma00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma03018 RNA degradation 2
gma03010 Ribosome 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03018 RNA degradation 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
vvi03018 RNA degradation 2
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03015 mRNA surveillance pathway 2
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae03018 RNA degradation 5
tae00450 Selenocompound metabolism 2
tae00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 4
tae03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 11
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03020 RNA polymerase 5
cre03420 Nucleotide excision repair 4
cre03008 Ribosome biogenesis in eukaryotes 3
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 6
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03440 Homologous recombination 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825335 100782953 100818324 101250449 4346519 100192964 103830312 103841986 100265488 7492754 11431768 123067730 123040610 123449937 107923046 107909774 106353278 106402471 5720981 8063580 8072548 102597680 102622275 100828383 107819315 107773161
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