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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8073979   probable U6 snRNA-associated Sm-like protein LSm4 
 zma-u.5   118473076   probable U6 snRNA-associated Sm-like protein LSm4 
 zma-u.5   100285873   U6 snRNA-associated Sm-like protein LSm4 
 osa-u.5   4326227   probable U6 snRNA-associated Sm-like protein LSm4 
 ath-u.5   emb1644   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100500134   small nuclear ribonucleoprotein family protein 
 gma-u.5   100786834   small nuclear RNP family protein 
 gma-u.5   100815676   putative sm-like protein LSM4 
 sly-u.5   101255434   probable U6 snRNA-associated Sm-like protein LSm4 
 vvi-u.5   100242667   probable U6 snRNA-associated Sm-like protein LSm4 
 vvi-u.5   100241738   probable U6 snRNA-associated Sm-like protein LSm4 
 ppo-u.5   7487777   probable U6 snRNA-associated Sm-like protein LSm4 
 ppo-u.5   7491308   probable U6 snRNA-associated Sm-like protein LSm4 
 mtr-u.5   11430696   sm-like protein LSM4 
 mtr-u.5   11426059   sm-like protein LSM4 

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Top 50 coexpressed genes to 8073979 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8073979 (sbi-r.1 coexpression data)

CoexMap"8073979"


sbiLOC8073979 | Entrez gene ID : 8073979      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 3 1 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0033962 [list] [network] P-body assembly  (11 genes)  IEA  
GO:0000387 [list] [network] spliceosomal snRNP assembly  (23 genes)  IEA  
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (54 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:0005688 [list] [network] U6 snRNP  (9 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (39 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
GO:0017070 [list] [network] U6 snRNA binding  (9 genes)  IEA  
Protein XP_002457589.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  extr 3,  chlo 1,  mito 1,  cysk 1  (predict for XP_002457589.1)
Subcellular
localization
TargetP
other 6  (predict for XP_002457589.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8073979

.
zma-u.5
for
118473076

.
zma-u.5
for
100285873

.
osa-u.5
for
4326227

.
ath-u.5
for
emb1644

.
gma-u.5
for
100500134

.
gma-u.5
for
100786834

.
gma-u.5
for
100815676

.
sly-u.5
for
101255434

.
vvi-u.5
for
100242667

.
vvi-u.5
for
100241738

.
ppo-u.5
for
7487777

.
ppo-u.5
for
7491308

.
mtr-u.5
for
11430696

.
mtr-u.5
for
11426059

.


Ortholog ID: 4977
Species ath gma gma sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna cre sbi sot sot cit cit bdi nta nta
Symbol emb1644 LOC100815676 LOC100786834 LOC101255434 LOC4326227 LOC118473076 LOC100285873 LOC103874515 LOC103837167 LOC100241738 LOC100242667 LOC7487777 LOC7491308 LOC11426059 LOC11430696 LOC123069570 LOC123078062 LOC123443408 LOC107917334 LOC107931236 LOC111200843 CHLRE_06g251300v5 LOC8073979 LOC102583085 LOC102606056 LOC102613630 LOC102620919 LOC100821596 LOC107769372 LOC107781164
Function* Small nuclear ribonucleoprotein family protein putative sm-like protein LSM4 small nuclear RNP family protein probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 sm-like protein LSM4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 sm-like protein LSM4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 probable U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4 uncharacterized protein probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4-like probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 probable U6 snRNA-associated Sm-like protein LSm4 putative U6 snRNA-associated Sm-like protein LSm4 sm-like protein LSM4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03010 Ribosome 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00190 Oxidative phosphorylation 3
sly03018 RNA degradation 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 8
osa03040 Spliceosome 6
osa03018 RNA degradation 4
osa03013 Nucleocytoplasmic transport 3
osa03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 4
zma03040 Spliceosome 4
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 12
zma03015 mRNA surveillance pathway 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 6
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 11
ppo03018 RNA degradation 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03010 Ribosome 4
ppo03050 Proteasome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 9
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 5
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna03018 RNA degradation 4
bna03060 Protein export 2
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03050 Proteasome 5
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03018 RNA degradation 3
sot03040 Spliceosome 3
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03022 Basal transcription factors 4
sot03018 RNA degradation 3
sot03040 Spliceosome 3
sot03083 Polycomb repressive complex 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03060 Protein export 2
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 4
cit03013 Nucleocytoplasmic transport 4
cit03040 Spliceosome 4
cit03015 mRNA surveillance pathway 3
cit03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 3
bdi03050 Proteasome 3
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03040 Spliceosome 4
nta03050 Proteasome 4
nta03440 Homologous recombination 4
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 6
nta03018 RNA degradation 2
nta03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832834 100815676 100786834 101255434 4326227 118473076 100285873 103874515 103837167 100241738 100242667 7487777 7491308 11426059 11430696 123069570 123078062 123443408 107917334 107931236 111200843 5722195 8073979 102583085 102606056 102613630 102620919 100821596 107769372 107781164
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