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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8074783   regulator of nonsense transcripts UPF2 
 zma-u.5   103627442   regulator of nonsense transcripts UPF2 
 zma-u.5   100194141   uncharacterized LOC100194141 
 osa-u.5   4330058   regulator of nonsense transcripts UPF2 
 ath-u.5   AT2G39260   regulator of nonsense transcripts UPF2 
 gma-u.5   100795746   regulator of nonsense transcripts UPF2 
 gma-u.5   100786092   regulator of nonsense transcripts UPF2 
 sly-u.5   101253276   regulator of nonsense transcripts UPF2 
 vvi-u.5   100258101   regulator of nonsense transcripts UPF2 
 ppo-u.5   7469776   regulator of nonsense transcripts UPF2 
 ppo-u.5   7458633   regulator of nonsense transcripts UPF2 
 mtr-u.5   11422854   regulator of nonsense transcripts UPF2 

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Top 50 coexpressed genes to 8074783 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8074783 (sbi-r.1 coexpression data)

CoexMap"8074783"


sbiLOC8074783 | Entrez gene ID : 8074783      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 1 1 2 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03013 [list] [network] Nucleocytoplasmic transport (112 genes)
sbi03015 [list] [network] mRNA surveillance pathway (120 genes)
GO BP
GO:0000184 [list] [network] nuclear-transcribed mRNA catabolic process, nonsense-mediated decay  (12 genes)  IEA  
GO CC
GO:0035145 [list] [network] exon-exon junction complex  (10 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002454211.1 [sequence] [blastp]
XP_021314634.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  cyto 4,  vacu 1,  cysk 1  (predict for XP_002454211.1)
nucl 5,  cyto 4,  vacu 1,  cysk 1  (predict for XP_021314634.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002454211.1)
other 9  (predict for XP_021314634.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8074783

.
zma-u.5
for
103627442

.
zma-u.5
for
100194141

.
osa-u.5
for
4330058

.
ath-u.5
for
AT2G39260

.
gma-u.5
for
100795746

.
gma-u.5
for
100786092

.
sly-u.5
for
101253276

.
vvi-u.5
for
100258101

.
ppo-u.5
for
7469776

.
ppo-u.5
for
7458633

.
mtr-u.5
for
11422854

.


Ortholog ID: 6838
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot cit bdi bdi nta nta
Symbol AT2G39260 LOC100795746 LOC100786092 LOC101253276 LOC4330058 LOC100194141 LOC103627442 LOC103857854 LOC100258101 LOC7458633 LOC7469776 LOC11422854 LOC123137553 LOC123189860 LOC123404355 LOC123427274 LOC107940875 LOC107891167 LOC106438093 LOC111214043 CHLRE_17g729393v5 CHLRE_17g729250v5 LOC8074783 LOC102580674 LOC102617412 LOC100824868 LOC100845822 LOC107766367 LOC107832518
Function* regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 uncharacterized LOC100194141 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2-like regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2-like regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 uncharacterized protein uncharacterized protein regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2 regulator of nonsense transcripts UPF2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03083 Polycomb repressive complex 2
ath04120 Ubiquitin mediated proteolysis 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03022 Basal transcription factors 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
bra03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 3
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 7
ppo03013 Nucleocytoplasmic transport 4
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03022 Basal transcription factors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03040 Spliceosome 3
ghi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 3
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
sbi03040 Spliceosome 3
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03022 Basal transcription factors 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 4
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
nta03013 Nucleocytoplasmic transport 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03015 mRNA surveillance pathway 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818511 100795746 100786092 101253276 4330058 100194141 103627442 103857854 100258101 7458633 7469776 11422854 123137553 123189860 123404355 123427274 107940875 107891167 106438093 111214043 66057066 5722841 8074783 102580674 102617412 100824868 100845822 107766367 107832518
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