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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8075387   DNA repair protein RAD4 
 zma-u.5   103645297   DNA repair protein RAD4 
 osa-u.5   4345619   DNA repair protein RAD4 
 ath-u.5   RAD4   DNA repair protein Rad4 family 
 gma-u.5   100818100   DNA repair protein RAD4 
 sly-u.5   101265989   DNA repair protein RAD4 
 vvi-u.5   100265647   DNA repair protein RAD4 
 ppo-u.5   7487392   DNA repair protein RAD4 
 mtr-u.5   11436447   DNA repair protein RAD4 

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Top 50 coexpressed genes to 8075387 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8075387 (sbi-r.1 coexpression data)

CoexMap"8075387"


sbiLOC8075387 | Entrez gene ID : 8075387      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03420 [list] [network] Nucleotide excision repair (89 genes)
GO BP
GO:0006298 [list] [network] mismatch repair  (21 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (48 genes)  IEA  
GO CC
GO:0000111 [list] [network] nucleotide-excision repair factor 2 complex  (1 genes)  IEA  
GO:0071942 [list] [network] XPC complex  (1 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (4816 genes)  IEA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (38 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (68 genes)  IEA  
Protein XP_002444371.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  nucl 4  (predict for XP_002444371.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002444371.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8075387

.
zma-u.5
for
103645297

.
osa-u.5
for
4345619

.
ath-u.5
for
RAD4

.
gma-u.5
for
100818100

.
sly-u.5
for
101265989

.
vvi-u.5
for
100265647

.
ppo-u.5
for
7487392

.
mtr-u.5
for
11436447

.


Ortholog ID: 10934
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RAD4 LOC100818100 LOC101265989 LOC4345619 LOC103645297 LOC103851059 LOC100265647 LOC7487392 LOC11436447 LOC123160887 LOC123150189 LOC123409758 LOC121219362 LOC107936805 LOC106354445 LOC106423638 CHLRE_12g557400v5 LOC8075387 LOC102584255 LOC102619998 LOC100830028 LOC107781198 LOC107817895
Function* DNA repair protein Rad4 family DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4-like uncharacterized protein DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4 DNA repair protein RAD4-like DNA repair protein RAD4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath00562 Inositol phosphate metabolism 2
ath04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 2
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
tae03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04145 Phagosome 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00562 Inositol phosphate metabolism 2
bna04070 Phosphatidylinositol signaling system 2
bna04145 Phagosome 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta03040 Spliceosome 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831525 100818100 101265989 4345619 103645297 103851059 100265647 7487392 11436447 123160887 123150189 123409758 121219362 107936805 106354445 106423638 66055851 8075387 102584255 102619998 100830028 107781198 107817895
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