ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8075554	elongation factor 2
zma-u.5	103644298	elongation factor 2
zma-u.5	100285098	uncharacterized LOC100285098
zma-u.5	103644301	elongation factor 2
osa-u.5	4326544	elongation factor 2
osa-u.5	4324669	elongation factor 2
osa-u.5	4329493	elongation factor 2
ath-u.5	FH3	formin 3
ath-u.5	AT4G17100	poly(U)-specific endoribonuclease-B protein
gma-u.5	100804251	elongation factor 2
gma-u.5	100790826	elongation factor 2
gma-u.5	100788357	elongation factor 2
sly-u.5	101254320	elongation factor 2
vvi-u.5	100261253	elongation factor 2
ppo-u.5	7483076	elongation factor 2
ppo-u.5	7483077	elongation factor 2
ppo-u.5	7492112	elongation factor 2
mtr-u.5	25483153	elongation factor 2
mtr-u.5	11406801	elongation factor 2
mtr-u.5	11408360	elongation factor 2

Top 50 coexpressed genes to 8075554 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8075554 (sbi-r.1 coexpression data)

CoexMap"8075554"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006414 [list] [network] translational elongation

(38 genes)

IEA

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex	(562 genes)	IEA
GO:0005829 [list] [network] cytosol	(856 genes)	IEA

GO MF

GO:0003746 [list] [network] translation elongation factor activity	(29 genes)	IEA
GO:0043022 [list] [network] ribosome binding	(53 genes)	IEA
GO:0003924 [list] [network] GTPase activity	(185 genes)	IEA
GO:0005525 [list] [network] GTP binding	(211 genes)	IEA

Protein

XP_002456335.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 6, nucl 2, chlo 1

(predict for XP_002456335.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002456335.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8075554 .	zma-u.5 for 103644298 .	zma-u.5 for 100285098 .	zma-u.5 for 103644301 .	osa-u.5 for 4326544 .	osa-u.5 for 4324669 .	osa-u.5 for 4329493 .	ath-u.5 for FH3 .	ath-u.5 for AT4G17100 .	gma-u.5 for 100804251 .	gma-u.5 for 100790826 .	gma-u.5 for 100788357 .	sly-u.5 for 101254320 .	vvi-u.5 for 100261253 .	ppo-u.5 for 7483076 .	ppo-u.5 for 7483077 .	ppo-u.5 for 7492112 .	mtr-u.5 for 25483153 .	mtr-u.5 for 11406801 .	mtr-u.5 for 11408360 .

Ortholog

Ortholog ID: 1180

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

FH3

LOS1

Function^*

formin 3

Ribosomal protein S5/Elongation factor G/III/V family protein

elongation factor 2

putative translation elongation factor family protein

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

uncharacterized protein

elongation factor 2

elongation factor 2-like

elongation factor 2

elongation factor 2-like

elongation factor 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	4
ath03013	Nucleocytoplasmic transport	4
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00591	Linoleic acid metabolism	4
gma00040	Pentose and glucuronate interconversions	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00970	Aminoacyl-tRNA biosynthesis	2
gma00270	Cysteine and methionine metabolism	2
gma00450	Selenocompound metabolism	2
gma01230	Biosynthesis of amino acids	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly03013	Nucleocytoplasmic transport	4
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03013	Nucleocytoplasmic transport	3
osa03010	Ribosome	2
osa00260	Glycine, serine and threonine metabolism	2
osa00270	Cysteine and methionine metabolism	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	3
osa04120	Ubiquitin mediated proteolysis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2
zma01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03015	mRNA surveillance pathway	2
zma03018	RNA degradation	2
zma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00970	Aminoacyl-tRNA biosynthesis	4
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	5
vvi03013	Nucleocytoplasmic transport	4
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03013	Nucleocytoplasmic transport	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	2
mtr00073	Cutin, suberine and wax biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	6
tae00240	Pyrimidine metabolism	3
tae01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	6
ghi01230	Biosynthesis of amino acids	6
ghi00300	Lysine biosynthesis	4
ghi00470	D-Amino acid metabolism	3
ghi00290	Valine, leucine and isoleucine biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00970	Aminoacyl-tRNA biosynthesis	6
ghi01230	Biosynthesis of amino acids	5
ghi00300	Lysine biosynthesis	3
ghi03013	Nucleocytoplasmic transport	2
ghi00470	D-Amino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3
bna00220	Arginine biosynthesis	2
bna00240	Pyrimidine metabolism	2
bna00250	Alanine, aspartate and glutamate metabolism	2
bna01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre00970	Aminoacyl-tRNA biosynthesis	2
cre00260	Glycine, serine and threonine metabolism	2
cre00270	Cysteine and methionine metabolism	2
cre01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00970	Aminoacyl-tRNA biosynthesis	4
sbi01240	Biosynthesis of cofactors	3
sbi00860	Porphyrin metabolism	2
sbi03013	Nucleocytoplasmic transport	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00970	Aminoacyl-tRNA biosynthesis	3
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2
sot01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	3
sot00970	Aminoacyl-tRNA biosynthesis	2
sot00230	Purine metabolism	2
sot00250	Alanine, aspartate and glutamate metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03013	Nucleocytoplasmic transport	3
cit03010	Ribosome	3
cit00190	Oxidative phosphorylation	2
cit00290	Valine, leucine and isoleucine biosynthesis	2
cit00770	Pantothenate and CoA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	8
cit03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	3
bdi04144	Endocytosis	3
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

827184

842058

100790826

100788357

101254320

4329493

4324669

100272648

103644298

103835225

100261253

7492112

7483076

11415386

25483153

123078663

123149064

123443968

123439759

121213757

107903816

106382668

106418012

5728754

8075554

102589228

102595666

102616841

102616295

100827163

100828009

107770162

107770769

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	ath	gma	sly	vvi	ppo	mtr	bra	nta	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	1	3	3	2	3	1	1	3	3	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8075554 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8075554 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**