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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8077679   sm-like protein LSM7 
 zma-u.5   100282349   LSM7-like 
 zma-u.5   100285982   LSM7-like 
 osa-u.5   4344803   sm-like protein LSM7 
 ath-u.5   EMB2816   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100807381   sm-like protein LSM7 
 gma-u.5   100306498   uncharacterized LOC100306498 
 sly-u.5   101258986   sm-like protein LSM7 
 vvi-u.5   100855332   sm-like protein LSM7 
 ppo-u.5   7481998   sm-like protein LSM7 
 ppo-u.5   7480092   sm-like protein LSM7 
 mtr-u.5   25501029   sm-like protein LSM7 
 mtr-u.5   11407370   sm-like protein LSM7 

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Top 50 coexpressed genes to 8077679 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8077679 (sbi-r.1 coexpression data)

CoexMap"8077679"


sbiLOC8077679 | Entrez gene ID : 8077679    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
sbi03040 [list] [network] Spliceosome (208 genes)
GO BP
GO:0000956 [list] [network] nuclear-transcribed mRNA catabolic process  (54 genes)  IEA  
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (170 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (6 genes)  IEA  
GO:0005688 [list] [network] U6 snRNP  (9 genes)  IEA  
GO:0005689 [list] [network] U12-type spliceosomal complex  (18 genes)  IEA  
GO:0071004 [list] [network] U2-type prespliceosome  (20 genes)  IEA  
GO:0097526 [list] [network] spliceosomal tri-snRNP complex  (39 genes)  IEA  
GO:0071013 [list] [network] catalytic step 2 spliceosome  (61 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002448604.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  nucl 1,  cysk_nucl 1,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for XP_002448604.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002448604.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8077679

.
zma-u.5
for
100282349

.
zma-u.5
for
100285982

.
osa-u.5
for
4344803

.
ath-u.5
for
EMB2816

.
gma-u.5
for
100807381

.
gma-u.5
for
100306498

.
sly-u.5
for
101258986

.
vvi-u.5
for
100855332

.
ppo-u.5
for
7481998

.
ppo-u.5
for
7480092

.
mtr-u.5
for
25501029

.
mtr-u.5
for
11407370

.


Ortholog ID: 5255
Species ath gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna cre sbi sot cit bdi bdi nta nta
Symbol EMB2816 LOC100306498 LOC101258986 LOC4344803 LOC100285982 LOC100282349 LOC103875380 LOC100855332 LOC7480092 LOC7481998 LOC11407370 LOC25501029 LOC123161401 LOC123047226 LOC123410023 LOC123428240 LOC107918492 LOC107926248 LOC106389258 CHLRE_03g164101v5 LOC8077679 LOC102580345 LOC102624901 LOC100841801 LOC100846427 LOC107784494 LOC107765381
Function* Small nuclear ribonucleoprotein family protein uncharacterized LOC100306498 sm-like protein LSM7 sm-like protein LSM7 LSM7-like LSM7-like sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 uncharacterized protein sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7 sm-like protein LSM7
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03020 RNA polymerase 2
ath03420 Nucleotide excision repair 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 7
gma03018 RNA degradation 3
gma03420 Nucleotide excision repair 3
gma04120 Ubiquitin mediated proteolysis 2
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00190 Oxidative phosphorylation 2
osa03040 Spliceosome 2
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 2
zma03020 RNA polymerase 2
zma03420 Nucleotide excision repair 2
zma03018 RNA degradation 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 4
bra03040 Spliceosome 3
bra03018 RNA degradation 2
bra03060 Protein export 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 6
ppo03018 RNA degradation 3
ppo03040 Spliceosome 3
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03018 RNA degradation 4
ppo03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 4
tae03040 Spliceosome 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00190 Oxidative phosphorylation 3
tae03040 Spliceosome 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
hvu03013 Nucleocytoplasmic transport 2
hvu03040 Spliceosome 2
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 12
hvu03040 Spliceosome 3
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 4
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 6
ghi03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 6
bna03018 RNA degradation 2
bna03040 Spliceosome 2
bna00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 11
cre03013 Nucleocytoplasmic transport 3
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 6
sbi03020 RNA polymerase 5
sbi04141 Protein processing in endoplasmic reticulum 3
sbi03040 Spliceosome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
sot03040 Spliceosome 3
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 6
cit03018 RNA degradation 3
cit03040 Spliceosome 3
cit04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta03018 RNA degradation 3
nta03010 Ribosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03018 RNA degradation 5
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 814913 100306498 101258986 4344803 100285982 100282349 103875380 100855332 7480092 7481998 11407370 25501029 123161401 123047226 123410023 123428240 107918492 107926248 106389258 5729059 8077679 102580345 102624901 100841801 100846427 107784494 107765381
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