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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8078394   replication factor C subunit 3 
 zma-u.5   100216703   replication factor C subunit 3 
 osa-u.5   4330895   replication factor C subunit 3-like 
 ath-u.5   RFC3   replication factor C subunit 3 
 gma-u.5   100805231   replication factor C subunit 3 
 gma-u.5   100782652   replication factor C subunit 3 
 sly-u.5   101264020   replication factor C subunit 3 
 vvi-u.5   100266082   replication factor C subunit 3 
 ppo-u.5   7466453   replication factor C subunit 3 
 mtr-u.5   11414029   replication factor C subunit 3 

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Top 50 coexpressed genes to 8078394 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8078394 (sbi-r.1 coexpression data)

CoexMap"8078394"


sbiLOC8078394 | Entrez gene ID : 8078394      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03030 [list] [network] DNA replication (53 genes)
sbi03410 [list] [network] Base excision repair (51 genes)
sbi03420 [list] [network] Nucleotide excision repair (89 genes)
sbi03430 [list] [network] Mismatch repair (39 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (88 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (318 genes)  IEA  
GO CC
GO:0005663 [list] [network] DNA replication factor C complex  (15 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0003689 [list] [network] DNA clamp loader activity  (15 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (434 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1849 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2084 genes)  IEA  
Protein XP_002454641.1 [sequence] [blastp]
Subcellular
localization
wolf
cysk 6,  chlo 1,  cyto 1,  nucl 1,  plas 1,  chlo_mito 1,  nucl_plas 1,  cyto_pero 1,  cyto_E.R. 1  (predict for XP_002454641.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_002454641.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8078394

.
zma-u.5
for
100216703

.
osa-u.5
for
4330895

.
ath-u.5
for
RFC3

.
gma-u.5
for
100805231

.
gma-u.5
for
100782652

.
sly-u.5
for
101264020

.
vvi-u.5
for
100266082

.
ppo-u.5
for
7466453

.
mtr-u.5
for
11414029

.


Ortholog ID: 8776
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RFC3 LOC100782652 LOC100805231 LOC101264020 LOC4330895 LOC100216703 LOC103853075 LOC103830567 LOC100266082 LOC7466453 LOC11414029 LOC123138373 LOC123054412 LOC123401909 LOC121229511 LOC107940558 LOC106353456 LOC106396996 CHLRE_12g527300v5 LOC8078394 LOC102578520 LOC102612743 LOC100821930 LOC107802759 LOC107822500
Function* replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3-like replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 replication factor C subunit 5 uncharacterized protein replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3 replication factor C subunit 3-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 7
ath03410 Base excision repair 7
ath03420 Nucleotide excision repair 5
ath03430 Mismatch repair 5
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
gma03410 Base excision repair 4
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03030 DNA replication 3
sly03410 Base excision repair 3
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03430 Mismatch repair 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03030 DNA replication 7
zma03420 Nucleotide excision repair 6
zma03430 Mismatch repair 5
zma03410 Base excision repair 4
zma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 4
vvi03420 Nucleotide excision repair 4
vvi03430 Mismatch repair 4
vvi03410 Base excision repair 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 2
ppo03410 Base excision repair 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 4
tae03083 Polycomb repressive complex 4
tae03410 Base excision repair 4
tae03030 DNA replication 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 4
hvu03018 RNA degradation 2
hvu03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi00230 Purine metabolism 2
ghi01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 4
bna03410 Base excision repair 4
bna03420 Nucleotide excision repair 4
bna03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 9
cre03410 Base excision repair 6
cre03420 Nucleotide excision repair 6
cre03430 Mismatch repair 6
cre03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 3
sbi03410 Base excision repair 3
sbi03420 Nucleotide excision repair 3
sbi03430 Mismatch repair 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03020 RNA polymerase 2
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 5
bdi03410 Base excision repair 4
bdi03420 Nucleotide excision repair 4
bdi03430 Mismatch repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 6
nta03030 DNA replication 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 3
nta03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 6
nta03030 DNA replication 4
nta03430 Mismatch repair 4
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844083 100782652 100805231 101264020 4330895 100216703 103853075 103830567 100266082 7466453 11414029 123138373 123054412 123401909 121229511 107940558 106353456 106396996 5722466 8078394 102578520 102612743 100821930 107802759 107822500
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