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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8080203   FACT complex subunit SPT16 
 zma-u.5   542546   global transcription factor C (Spt16) 
 osa-u.5   4352155   FACT complex subunit SPT16-like 
 osa-u.5   4335478   FACT complex subunit SPT16-like 
 ath-u.5   SPT16   global transcription factor C 
 gma-u.5   100793201   FACT complex subunit SPT16 
 gma-u.5   100792677   FACT complex subunit SPT16 
 gma-u.5   100819092   FACT complex subunit SPT16 
 sly-u.5   101261165   FACT complex subunit SPT16-like 
 sly-u.5   101247071   FACT complex subunit SPT16-like 
 sly-u.5   101260671   FACT complex subunit SPT16-like 
 vvi-u.5   100263194   FACT complex subunit SPT16 
 vvi-u.5   100263158   FACT complex subunit SPT16 
 ppo-u.5   7465222   FACT complex subunit SPT16 
 ppo-u.5   18098491   FACT complex subunit SPT16-like 
 ppo-u.5   18098490   FACT complex subunit SPT16 
 mtr-u.5   11406725   FACT complex subunit SPT16 
 mtr-u.5   11429385   FACT complex subunit SPT16 

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Top 50 coexpressed genes to 8080203 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8080203 (sbi-r.1 coexpression data)

CoexMap"8080203"


sbiLOC8080203 | Entrez gene ID : 8080203      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 3 3 2 3 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032968 [list] [network] positive regulation of transcription elongation by RNA polymerase II  (19 genes)  IEA  
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (22 genes)  IEA  
GO CC
GO:0035101 [list] [network] FACT complex  (4 genes)  IEA  
GO MF
GO:0031491 [list] [network] nucleosome binding  (25 genes)  IEA  
Protein XP_002466155.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  chlo 1,  mito 1,  chlo_mito 1  (predict for XP_002466155.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002466155.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8080203

.
zma-u.5
for
542546

.
osa-u.5
for
4352155

.
osa-u.5
for
4335478

.
ath-u.5
for
SPT16

.
gma-u.5
for
100793201

.
gma-u.5
for
100792677

.
gma-u.5
for
100819092

.
sly-u.5
for
101261165

.
sly-u.5
for
101247071

.
sly-u.5
for
101260671

.
vvi-u.5
for
100263194

.
vvi-u.5
for
100263158

.
ppo-u.5
for
7465222

.
ppo-u.5
for
18098491

.
ppo-u.5
for
18098490

.
mtr-u.5
for
11406725

.
mtr-u.5
for
11429385

.


Ortholog ID: 3119
Species ath gma gma sly sly osa osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol SPT16 LOC100785245 LOC100792677 LOC101247071 LOC101261165 LOC4335478 LOC4352155 LOC542546 LOC103833934 LOC103858574 LOC100263194 LOC100263158 LOC7465222 LOC18098490 LOC11429385 LOC11406725 LOC123051295 LOC123187247 LOC123424502 LOC107886465 LOC107927240 LOC106388535 LOC125578349 CHLRE_12g540076v5 LOC8080203 LOC102589701 LOC102588201 LOC102607954 LOC102607456 LOC100830242 LOC100844232 LOC107778560 LOC107778562
Function* global transcription factor C FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16-like global transcription factor C (Spt16) FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like uncharacterized protein FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16-like FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16 FACT complex subunit SPT16 FACT complex subunit SPT16-like FACT complex subunit SPT16-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 5
gma04626 Plant-pathogen interaction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03420 Nucleotide excision repair 2
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 11
sly03420 Nucleotide excision repair 2
sly03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03082 ATP-dependent chromatin remodeling 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
ppo00220 Arginine biosynthesis 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03018 RNA degradation 3
tae04120 Ubiquitin mediated proteolysis 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
tae00310 Lysine degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03015 mRNA surveillance pathway 4
hvu04120 Ubiquitin mediated proteolysis 2
hvu03013 Nucleocytoplasmic transport 2
hvu04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 3
bna05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 6
cre03013 Nucleocytoplasmic transport 2
cre03040 Spliceosome 2
cre03082 ATP-dependent chromatin remodeling 2
cre03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi00970 Aminoacyl-tRNA biosynthesis 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 3
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
bdi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 826665 100785245 100792677 101247071 101261165 4335478 4352155 542546 103833934 103858574 100263194 100263158 7465222 18098490 11429385 11406725 123051295 123187247 123424502 107886465 107927240 106388535 125578349 5728600 8080203 102589701 102588201 102607954 102607456 100830242 100844232 107778560 107778562
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