Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8080362   sm-like protein LSM1B 
 zma-u.5   100280029   uncharacterized LOC100280029 
 zma-u.5   100280518   small nuclear ribonucleoprotein LSM1 
 osa-u.5   4335963   sm-like protein LSM1B 
 ath-u.5   LSM1B   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM1A   Small nuclear ribonucleoprotein family protein 
 gma-u.5   100812441   sm-like protein LSM1B 
 gma-u.5   100306352   uncharacterized LOC100306352 
 sly-u.5   101254180   sm-like protein LSM1B 
 sly-u.5   101252597   sm-like protein LSM1B 
 vvi-u.5   100250857   sm-like protein LSM1B 
 vvi-u.5   100249828   sm-like protein LSM1B 
 ppo-u.5   7475679   sm-like protein LSM1B 
 ppo-u.5   18094708   sm-like protein LSM1B 
 mtr-u.5   11421251   sm-like protein LSM1B 
 mtr-u.5   11444969   sm-like protein LSM1B 

close


Top 50 coexpressed genes to 8080362 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to 8080362 (sbi-r.1 coexpression data)

CoexMap"8080362"


sbiLOC8080362 | Entrez gene ID : 8080362      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 2 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (9 genes)  IEA  
GO CC
GO:1990726 [list] [network] Lsm1-7-Pat1 complex  (6 genes)  IEA  
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
GO:0000339 [list] [network] RNA cap binding  (8 genes)  IEA  
Protein XP_002446548.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 4,  nucl 1,  golg 1  (predict for XP_002446548.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002446548.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8080362

.
zma-u.5
for
100280029

.
zma-u.5
for
100280518

.
osa-u.5
for
4335963

.
ath-u.5
for
LSM1B

.
ath-u.5
for
LSM1A

.
gma-u.5
for
100812441

.
gma-u.5
for
100306352

.
sly-u.5
for
101254180

.
sly-u.5
for
101252597

.
vvi-u.5
for
100250857

.
vvi-u.5
for
100249828

.
ppo-u.5
for
7475679

.
ppo-u.5
for
18094708

.
mtr-u.5
for
11421251

.
mtr-u.5
for
11444969

.


Ortholog ID: 2812
Species ath ath gma gma sly osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi bna bna cre sbi sot cit cit bdi bdi nta nta
Symbol LSM1A LSM1B LOC100812441 LOC100306352 LOC101254180 LOC4335963 LOC100280518 LOC100280029 LOC103842307 LOC103859552 LOC100249828 LOC18094708 LOC7475679 LOC11421251 LOC11444969 LOC123189325 LOC123053420 LOC123426834 LOC107906055 LOC106452252 LOC111215720 CHLRE_12g538750v5 LOC8080362 LOC102599663 LOC102608898 LOC102617712 LOC100824555 LOC100825845 LOC107805614 LOC107782860
Function* Small nuclear ribonucleoprotein family protein Small nuclear ribonucleoprotein family protein sm-like protein LSM1B uncharacterized LOC100306352 sm-like protein LSM1B sm-like protein LSM1B small nuclear ribonucleoprotein LSM1 uncharacterized LOC100280029 sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B uncharacterized protein sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1A sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B sm-like protein LSM1B
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath04144 Endocytosis 3
ath03018 RNA degradation 2
ath03015 mRNA surveillance pathway 2
ath04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03018 RNA degradation 3
gma03040 Spliceosome 3
gma00510 N-Glycan biosynthesis 2
gma00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 5
gma03018 RNA degradation 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03018 RNA degradation 3
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04136 Autophagy - other 2
osa03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 5
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 11
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 5
bra03008 Ribosome biogenesis in eukaryotes 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 4
ppo03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
ppo03018 RNA degradation 4
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 12
tae03015 mRNA surveillance pathway 4
tae04382 Cornified envelope formation 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 11
tae00230 Purine metabolism 3
tae00730 Thiamine metabolism 3
tae01232 Nucleotide metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 7
ghi03083 Polycomb repressive complex 4
ghi04141 Protein processing in endoplasmic reticulum 4
ghi03040 Spliceosome 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
bna00190 Oxidative phosphorylation 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
cre03050 Proteasome 3
cre00190 Oxidative phosphorylation 3
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03420 Nucleotide excision repair 3
sbi03040 Spliceosome 2
sbi03018 RNA degradation 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03040 Spliceosome 3
cit03420 Nucleotide excision repair 2
cit03060 Protein export 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 3
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04144 Endocytosis 2
nta04145 Phagosome 2
nta04148 Efferocytosis 2
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838495 820624 100812441 100306352 101254180 4335963 100280518 100280029 103842307 103859552 100249828 18094708 7475679 11421251 11444969 123189325 123053420 123426834 107906055 106452252 111215720 5718440 8080362 102599663 102608898 102617712 100824555 100825845 107805614 107782860
The preparation time of this page was 0.3 [sec].