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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8081372   protein PAT1 homolog 1 
 zma-u.5   100279503   Topoisomerase II-associated protein PAT1 
 zma-u.5   103630584   protein PAT1 homolog 1 
 zma-u.5   109942640   protein PAT1 homolog 1-like 
 osa-u.5   4325594   protein PAT1 homolog 1 
 osa-u.5   4329076   protein PAT1 homolog 
 osa-u.5   4329480   protein PAT1 homolog 1 
 ath-u.5   AT3G22270   Topoisomerase II-associated protein PAT1 
 ath-u.5   AT4G14990   Topoisomerase II-associated protein PAT1 
 ath-u.5   AT1G79090   topoisomerase II-associated protein 
 gma-u.5   100787112   protein PAT1 homolog 
 gma-u.5   100779096   protein PAT1 homolog 
 gma-u.5   100812450   protein PAT1 homolog 1 
 sly-u.5   101253667   protein PAT1 homolog 
 sly-u.5   101257075   protein PAT1 homolog 1-like 
 sly-u.5   101260608   protein PAT1 homolog 2 
 vvi-u.5   100267869   protein PAT1 homolog 
 vvi-u.5   100255521   protein PAT1 homolog 2 
 ppo-u.5   7454988   protein PAT1 homolog 
 ppo-u.5   7480371   protein PAT1 homolog 
 ppo-u.5   7495641   protein PAT1 homolog 1 
 mtr-u.5   25487016   protein PAT1 homolog 
 mtr-u.5   25487017   protein PAT1 homolog 
 mtr-u.5   120577294   protein PAT1 homolog 1 

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Top 50 coexpressed genes to 8081372 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8081372 (sbi-r.1 coexpression data)

CoexMap"8081372"


sbiLOC8081372 | Entrez gene ID : 8081372    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 3 3 3 3 3 2 3 3 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0000290 [list] [network] deadenylation-dependent decapping of nuclear-transcribed mRNA  (9 genes)  IEA  
GO:0033962 [list] [network] P-body assembly  (11 genes)  IEA  
GO CC
GO:0000932 [list] [network] P-body  (47 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002457099.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto_nucl 5  (predict for XP_002457099.2)
Subcellular
localization
TargetP
other 5,  chlo 3  (predict for XP_002457099.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8081372

.
zma-u.5
for
100279503

.
zma-u.5
for
103630584

.
zma-u.5
for
109942640

.
osa-u.5
for
4325594

.
osa-u.5
for
4329076

.
osa-u.5
for
4329480

.
ath-u.5
for
AT3G22270

.
ath-u.5
for
AT4G14990

.
ath-u.5
for
AT1G79090

.
gma-u.5
for
100787112

.
gma-u.5
for
100779096

.
gma-u.5
for
100812450

.
sly-u.5
for
101253667

.
sly-u.5
for
101257075

.
sly-u.5
for
101260608

.
vvi-u.5
for
100267869

.
vvi-u.5
for
100255521

.
ppo-u.5
for
7454988

.
ppo-u.5
for
7480371

.
ppo-u.5
for
7495641

.
mtr-u.5
for
25487016

.
mtr-u.5
for
25487017

.
mtr-u.5
for
120577294

.


Ortholog ID: 921
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol AT4G14990 AT3G22270 LOC100779096 LOC100812450 LOC101253667 LOC101260608 LOC4329480 LOC4329076 LOC100272651 LOC100383823 LOC103834665 LOC103832387 LOC100255521 LOC100267869 LOC7454988 LOC7480371 LOC120577294 LOC25487016 LOC123139643 LOC123104606 LOC123444512 LOC123447445 LOC107948554 LOC107928350 LOC106346757 LOC106353417 CHLRE_06g278203v5 LOC8067493 LOC8072123 LOC102604826 LOC102596910 LOC102611484 LOC102618153 LOC100835878 LOC100838182 LOC107794986 LOC107781173
Function* Topoisomerase II-associated protein PAT1 Topoisomerase II-associated protein PAT1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 2 protein PAT1 homolog 1 protein PAT1 homolog uncharacterized LOC100272651 Topoisomerase II-associated protein PAT1 protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 2 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog 1-like protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog protein PAT1 homolog uncharacterized protein uncharacterized LOC8067493 uncharacterized LOC8072123 uncharacterized LOC102604826 protein PAT1 homolog 1 protein PAT1 homolog protein PAT1 homolog 1-like protein PAT1 homolog protein PAT1 homolog 1 protein PAT1 homolog 1 protein PAT1 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma04148 Efferocytosis 3
gma03013 Nucleocytoplasmic transport 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 3
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 3
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03018 RNA degradation 3
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae02010 ABC transporters 3
tae03082 ATP-dependent chromatin remodeling 3
tae03018 RNA degradation 3
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00541 Biosynthesis of various nucleotide sugars 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 5
cit03015 mRNA surveillance pathway 3
cit03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta03013 Nucleocytoplasmic transport 4
nta04626 Plant-pathogen interaction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827158 821797 100779096 100812450 101253667 101260608 4329480 4329076 100272651 100383823 103834665 103832387 100255521 100267869 7454988 7480371 120577294 25487016 123139643 123104606 123444512 123447445 107948554 107928350 106346757 106353417 5723634 8067493 8072123 102604826 102596910 102611484 102618153 100835878 100838182 107794986 107781173
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