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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8082831   RAP domain-containing protein, chloroplastic 
 zma-u.5   103649620   RAP 
 osa-u.5   AL1   Albino Leaf1 
 ath-u.5   RAP   RAP 
 gma-u.5   100805208   RAP domain-containing protein, chloroplastic 
 gma-u.5   100794144   RAP domain-containing protein, chloroplastic 
 sly-u.5   101258337   RAP domain-containing protein, chloroplastic 
 vvi-u.5   100257808   RAP domain-containing protein, chloroplastic 
 ppo-u.5   18106372   RAP domain-containing protein, chloroplastic 
 mtr-u.5   25502299   RAP domain-containing protein, chloroplastic 

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Top 50 coexpressed genes to 8082831 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8082831 (sbi-r.1 coexpression data)

CoexMap"8082831"


sbiLOC8082831 | Entrez gene ID : 8082831      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0044528 [list] [network] regulation of mitochondrial mRNA stability  (1 genes)  IEA  
GO:1901259 [list] [network] chloroplast rRNA processing  (5 genes)  IEA  
GO:0000963 [list] [network] mitochondrial RNA processing  (6 genes)  IEA  
GO CC
GO:0005759 [list] [network] mitochondrial matrix  (73 genes)  IEA  
GO:0035770 [list] [network] ribonucleoprotein granule  (76 genes)  IEA  
GO:0009507 [list] [network] chloroplast  (560 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
Protein XP_002457183.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  cyto 1,  cyto_nucl 1  (predict for XP_002457183.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002457183.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8082831

.
zma-u.5
for
103649620

.
osa-u.5
for
AL1

.
ath-u.5
for
RAP

.
gma-u.5
for
100805208

.
gma-u.5
for
100794144

.
sly-u.5
for
101258337

.
vvi-u.5
for
100257808

.
ppo-u.5
for
18106372

.
mtr-u.5
for
25502299

.


Ortholog ID: 10015
Species ath gma gma sly osa zma vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RAP LOC100794144 LOC100805208 LOC101258337 AL1 LOC103649620 LOC100257808 LOC18106372 LOC25502299 LOC123060241 LOC123068747 LOC123442779 LOC107928108 LOC107962352 LOC106387987 LOC106437711 CHLRE_09g389541v5 LOC8082831 LOC102585574 LOC102607518 LOC100844423 LOC107769616 LOC107814648
Function* RAP RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic Albino Leaf1 RAP RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic uncharacterized protein RAP domain-containing protein, chloroplastic uncharacterized LOC102585574 RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic RAP domain-containing protein, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 3
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna04626 Plant-pathogen interaction 3
bna03060 Protein export 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04141 Protein processing in endoplasmic reticulum 5
bna04626 Plant-pathogen interaction 3
bna03060 Protein export 2
bna04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01240 Biosynthesis of cofactors 2
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00860 Porphyrin metabolism 2
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817747 100794144 100805208 101258337 4333151 103649620 100257808 18106372 25502299 123060241 123068747 123442779 107928108 107962352 106387987 106437711 5720612 8082831 102585574 102607518 100844423 107769616 107814648
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