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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8084787   exosome complex component RRP42 
 zma-u.5   118471885   exosome complex component RRP42-like 
 zma-u.5   103626486   exosome complex component RRP42-like 
 zma-u.5   100856959   exosome complex exonuclease RRP42 
 osa-u.5   4352037   uncharacterized LOC4352037 
 ath-u.5   AT3G07750   3'-5'-exoribonuclease family protein 
 gma-u.5   100818134   exosome complex component RRP42 
 gma-u.5   100806953   exosome complex component RRP42 
 sly-u.5   101268414   uncharacterized LOC101268414 
 vvi-u.5   100261229   uncharacterized LOC100261229 
 ppo-u.5   7456004   uncharacterized LOC7456004 
 mtr-u.5   25482505   exosome complex component RRP42 
 mtr-u.5   11406638   exosome complex component RRP42 

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Top 50 coexpressed genes to 8084787 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8084787 (sbi-r.1 coexpression data)

CoexMap"8084787"


sbiLOC8084787 | Entrez gene ID : 8084787    
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 3 1 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03018 [list] [network] RNA degradation (112 genes)
GO BP
GO:0034473 [list] [network] U1 snRNA 3'-end processing  (5 genes)  IEA  
GO:0034476 [list] [network] U5 snRNA 3'-end processing  (5 genes)  IEA  
GO:0071042 [list] [network] nuclear polyadenylation-dependent mRNA catabolic process  (5 genes)  IEA  
GO:0071028 [list] [network] nuclear mRNA surveillance  (9 genes)  IEA  
GO:0034475 [list] [network] U4 snRNA 3'-end processing  (11 genes)  IEA  
GO:0071035 [list] [network] nuclear polyadenylation-dependent rRNA catabolic process  (11 genes)  IEA  
GO:0071038 [list] [network] TRAMP-dependent tRNA surveillance pathway  (11 genes)  IEA  
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (15 genes)  IEA  
GO CC
GO:0000177 [list] [network] cytoplasmic exosome (RNase complex)  (12 genes)  IEA  
GO:0000176 [list] [network] nuclear exosome (RNase complex)  (17 genes)  IEA  
GO MF
Protein XP_021301470.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 4,  chlo 2,  cyto 2,  cysk 1,  cyto_pero 1  (predict for XP_021301470.1)
Subcellular
localization
TargetP
other 6  (predict for XP_021301470.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8084787

.
zma-u.5
for
118471885

.
zma-u.5
for
103626486

.
zma-u.5
for
100856959

.
osa-u.5
for
4352037

.
ath-u.5
for
AT3G07750

.
gma-u.5
for
100818134

.
gma-u.5
for
100806953

.
sly-u.5
for
101268414

.
vvi-u.5
for
100261229

.
ppo-u.5
for
7456004

.
mtr-u.5
for
25482505

.
mtr-u.5
for
11406638

.


Ortholog ID: 6257
Species ath gma gma sly osa zma zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol AT3G07750 LOC100806953 LOC100818134 LOC101268414 LOC4352037 LOC100856959 LOC118471885 LOC103870639 LOC100261229 LOC7456004 LOC25482505 LOC11406638 LOC123147409 LOC123168189 LOC123409844 LOC107904275 LOC121216210 LOC125587739 LOC106401927 CHLRE_03g188200v5 LOC110430480 LOC8084787 LOC102606240 LOC102629532 LOC100826882 LOC100845366 LOC107801111 LOC107782269
Function* 3'-5'-exoribonuclease family protein exosome complex component RRP42 exosome complex component RRP42 uncharacterized LOC101268414 uncharacterized LOC4352037 exosome complex exonuclease RRP42 exosome complex component RRP42-like exosome complex component RRP42 uncharacterized LOC100261229 uncharacterized LOC7456004 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42 exosome complex component RRP42-like exosome complex component RRP42-like uncharacterized protein putative exosome complex exonuclease RRP42 exosome complex component RRP42 exosome complex exonuclease RRP42 uncharacterized LOC102629532 exosome complex component RRP42 exosome complex component RRP42 uncharacterized LOC107801111 uncharacterized LOC107782269
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 13
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 10
gma03018 RNA degradation 2
gma00790 Folate biosynthesis 2
gma01240 Biosynthesis of cofactors 2
gma04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 8
sly03410 Base excision repair 2
sly03018 RNA degradation 2
sly01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa00970 Aminoacyl-tRNA biosynthesis 2
osa03020 RNA polymerase 2
osa03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo01240 Biosynthesis of cofactors 2
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03018 RNA degradation 4
mtr03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 10
mtr03040 Spliceosome 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
tae03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 5
ghi03018 RNA degradation 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
ghi03018 RNA degradation 4
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 7
sbi03018 RNA degradation 3
sbi03410 Base excision repair 2
sbi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
bdi03018 RNA degradation 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 3
nta03010 Ribosome 2
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819966 100806953 100818134 101268414 4352037 100856959 118471885 103870639 100261229 7456004 25482505 11406638 123147409 123168189 123409844 107904275 121216210 125587739 106401927 66052931 110430480 8084787 102606240 102629532 100826882 100845366 107801111 107782269
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