ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8085442	ruvB-like protein 1
zma-u.5	100272912	uncharacterized LOC100272912
zma-u.5	100191624	RuvB-like protein 1
osa-u.5	4327368	ruvB-like protein 1
osa-u.5	4342553	ruvB-like protein 1
ath-u.5	RIN1	P-loop containing nucleoside triphosphate hydrolases superfamily protein
gma-u.5	102659805	ruvB-like protein 1
gma-u.5	100809596	ruvB-like protein 1
sly-u.5	101264735	ruvB-like protein 1
sly-u.5	101256745	ruvB-like protein 1
vvi-u.5	100262179	ruvB-like protein 1
ppo-u.5	18098083	ruvB-like protein 1
ppo-u.5	7478571	ruvB-like protein 1
mtr-u.5	11435218	ruvB-like protein 1

functional annotation

KEGG

sbi03082 [list] [network] ATP-dependent chromatin remodeling (65 genes)

GO BP

GO:0000492 [list] [network] box C/D snoRNP assembly	(7 genes)	IEA
GO:0006338 [list] [network] chromatin remodeling	(114 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(365 genes)	IEA

GO CC

GO:0097255 [list] [network] R2TP complex	(3 genes)	IEA
GO:0000812 [list] [network] Swr1 complex	(8 genes)	IEA
GO:0035267 [list] [network] NuA4 histone acetyltransferase complex	(9 genes)	IEA
GO:0031011 [list] [network] Ino80 complex	(14 genes)	IEA

GO MF

GO:0003678 [list] [network] DNA helicase activity	(77 genes)	IEA
GO:0016887 [list] [network] ATP hydrolysis activity	(434 genes)	IEA
GO:0005524 [list] [network] ATP binding	(2084 genes)	IEA

Protein

XP_002456604.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9

(predict for XP_002456604.1)

Subcellular
localization
TargetP

other 8

(predict for XP_002456604.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8085442 .	zma-u.5 for 100272912 .	zma-u.5 for 100191624 .	osa-u.5 for 4327368 .	osa-u.5 for 4342553 .	ath-u.5 for RIN1 .	gma-u.5 for 102659805 .	gma-u.5 for 100809596 .	sly-u.5 for 101264735 .	sly-u.5 for 101256745 .	vvi-u.5 for 100262179 .	ppo-u.5 for 18098083 .	ppo-u.5 for 7478571 .	mtr-u.5 for 11435218 .

Ortholog ID: 4619

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

RIN1

Function^*

P-loop containing nucleoside triphosphate hydrolases superfamily protein

ruvB-like protein 1

uncharacterized LOC100272912

RuvB-like protein 1

ruvB-like protein 1

uncharacterized protein

ruvB-like protein 1

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma01230	Biosynthesis of amino acids	2
gma03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	4
gma03010	Ribosome	2
gma03018	RNA degradation	2
gma03013	Nucleocytoplasmic transport	2
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	3
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	2
sly03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03040	Spliceosome	3
osa03082	ATP-dependent chromatin remodeling	3
osa03030	DNA replication	2
osa03410	Base excision repair	2
osa03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	3
zma03082	ATP-dependent chromatin remodeling	2
zma03008	Ribosome biogenesis in eukaryotes	2
zma03013	Nucleocytoplasmic transport	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	4
zma03082	ATP-dependent chromatin remodeling	2
zma04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	2
bra03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03082	ATP-dependent chromatin remodeling	3
ppo03010	Ribosome	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3
mtr00970	Aminoacyl-tRNA biosynthesis	2
mtr03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03082	ATP-dependent chromatin remodeling	3
tae04141	Protein processing in endoplasmic reticulum	3
tae00340	Histidine metabolism	3
tae01230	Biosynthesis of amino acids	3
tae03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	4
tae03082	ATP-dependent chromatin remodeling	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	2
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3
ghi00670	One carbon pool by folate	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi01230	Biosynthesis of amino acids	6
ghi03082	ATP-dependent chromatin remodeling	4
ghi00260	Glycine, serine and threonine metabolism	3
ghi00460	Cyanoamino acid metabolism	3
ghi00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	2
cre03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	3
sbi03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	3
sot00230	Purine metabolism	2
sot03082	ATP-dependent chromatin remodeling	2
sot03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00908	Zeatin biosynthesis	3
nta03082	ATP-dependent chromatin remodeling	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03082	ATP-dependent chromatin remodeling	2

Expression

Expression pattern

Entrez Gene ID^*

832293

100809596

102659805

101256745

101264735

4342553

4327368

100272912

100191624

103851434

100262179

7478571

18098083

11435218

123095830

123087141

123449672

107889188

107902779

106384702

106371658

5722339

8057503

8085442

102579037

102584723

102608634

100835511

107795284

107824339

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8085442 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8085442 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	ath	gma	sly	vvi	ppo	mtr	bra	nta	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	1	2	2	1	2	2	1	2	1	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8085442 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8085442 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**