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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8085458   DEAD-box ATP-dependent RNA helicase 38 
 zma-u.5   100193503   DEAD-box ATP-dependent RNA helicase 38 
 osa-u.5   4331680   DEAD-box ATP-dependent RNA helicase 38-like 
 ath-u.5   LOS4   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 gma-u.5   100784739   DEAD-box ATP-dependent RNA helicase 38 
 gma-u.5   100778091   DEAD-box ATP-dependent RNA helicase 38 
 sly-u.5   101252541   DEAD-box ATP-dependent RNA helicase 38 
 sly-u.5   101243705   DEAD-box ATP-dependent RNA helicase 38 
 vvi-u.5   100247027   DEAD-box ATP-dependent RNA helicase 38 
 vvi-u.5   100854880   DEAD-box ATP-dependent RNA helicase 38 
 vvi-u.5   100257270   DEAD-box ATP-dependent RNA helicase 38 
 ppo-u.5   18100101   DEAD-box ATP-dependent RNA helicase 38 
 mtr-u.5   25492156   DEAD-box ATP-dependent RNA helicase 38 
 mtr-u.5   11434133   DEAD-box ATP-dependent RNA helicase 38 

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Top 50 coexpressed genes to 8085458 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8085458 (sbi-r.1 coexpression data)

CoexMap"8085458"


sbiLOC8085458 | Entrez gene ID : 8085458      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 1 1 1 2 2 3 1 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03013 [list] [network] Nucleocytoplasmic transport (112 genes)
sbi03015 [list] [network] mRNA surveillance pathway (120 genes)
GO BP
GO:0016973 [list] [network] poly(A)+ mRNA export from nucleus  (7 genes)  IEA  
GO CC
GO:0010494 [list] [network] cytoplasmic stress granule  (10 genes)  IEA  
GO:0005634 [list] [network] nucleus  (2977 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (61 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1243 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2084 genes)  IEA  
Protein XP_002468475.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  nucl 1,  chlo_mito 1  (predict for XP_002468475.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002468475.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8085458

.
zma-u.5
for
100193503

.
osa-u.5
for
4331680

.
ath-u.5
for
LOS4

.
gma-u.5
for
100784739

.
gma-u.5
for
100778091

.
sly-u.5
for
101252541

.
sly-u.5
for
101243705

.
vvi-u.5
for
100247027

.
vvi-u.5
for
100854880

.
vvi-u.5
for
100257270

.
ppo-u.5
for
18100101

.
mtr-u.5
for
25492156

.
mtr-u.5
for
11434133

.


Ortholog ID: 5128
Species ath gma gma sly sly osa zma bra bra vvi vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol LOS4 LOC100784739 LOC100778091 LOC101243705 LOC101252541 LOC4331680 LOC100193503 LOC103850278 LOC103863439 LOC100854880 LOC100247027 LOC18100101 LOC11434133 LOC25492156 LOC123121195 LOC123084882 LOC123449488 LOC107899509 LOC107931533 LOC111203637 LOC106389130 CHLRE_06g306850v5 LOC8085458 LOC102600806 LOC102609367 LOS4 LOC107772250 LOC107825795
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 uncharacterized protein DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38 DEAD-box ATP-dependent RNA helicase 38-like DEAD-box ATP-dependent RNA helicase 38
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03083 Polycomb repressive complex 2
ath04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 7
gma03050 Proteasome 6
gma03008 Ribosome biogenesis in eukaryotes 5
gma03250 Viral life cycle - HIV-1 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma03015 mRNA surveillance pathway 4
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03013 Nucleocytoplasmic transport 2
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 3
sly03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 4
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03015 mRNA surveillance pathway 2
bra03018 RNA degradation 2
bra00190 Oxidative phosphorylation 2
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi03015 mRNA surveillance pathway 3
vvi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03008 Ribosome biogenesis in eukaryotes 3
ppo03250 Viral life cycle - HIV-1 3
ppo01200 Carbon metabolism 2
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 5
mtr03018 RNA degradation 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 4
mtr03040 Spliceosome 3
mtr03018 RNA degradation 2
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 8
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00620 Pyruvate metabolism 3
tae00710 Carbon fixation by Calvin cycle 3
tae01200 Carbon metabolism 3
tae03040 Spliceosome 3
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03050 Proteasome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 5
ghi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 4
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 5
sot00480 Glutathione metabolism 3
sot03010 Ribosome 3
sot03008 Ribosome biogenesis in eukaryotes 3
sot03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00970 Aminoacyl-tRNA biosynthesis 4
cit03015 mRNA surveillance pathway 3
cit04141 Protein processing in endoplasmic reticulum 2
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 10
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03015 mRNA surveillance pathway 4
nta04141 Protein processing in endoplasmic reticulum 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824477 100784739 100778091 101243705 101252541 4331680 100193503 103850278 103863439 100854880 100247027 18100101 11434133 25492156 123121195 123084882 123449488 107899509 107931533 111203637 106389130 5716869 8085458 102600806 102609367 100841980 107772250 107825795
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