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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8086040   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 zma-u.5   541712   RUBISCO activase 1 
 zma-u.5   100382265   RUBISCO activase1 
 osa-u.5   4351224   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 ath-u.5   RCA   rubisco activase 
 gma-u.5   RCA03   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 gma-u.5   RCA14   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like 
 gma-u.5   RCABETA   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like 
 sly-u.5   101249777   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 sly-u.5   101250725   ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic 
 vvi-u.5   100256315   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100266698   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 vvi-u.5   100263871   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   7487971   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 ppo-u.5   7458129   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 mtr-u.5   11442149   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 
 mtr-u.5   11412610   ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic 
 mtr-u.5   25489329   ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic 

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Top 50 coexpressed genes to 8086040 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8086040 (sbi-r.1 coexpression data)

CoexMap"8086040"


sbiLOC8086040 | Entrez gene ID : 8086040      
Species sbi zma osa ath gma sly vvi ppo mtr bra nta cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009570 [list] [network] chloroplast stroma  (94 genes)  IEA  
GO:0009579 [list] [network] thylakoid  (141 genes)  IEA  
GO MF
GO:0046863 [list] [network] ribulose-1,5-bisphosphate carboxylase/oxygenase activator activity  (2 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (434 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2084 genes)  IEA  
Protein XP_002451328.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002451328.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002451328.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8086040

.
zma-u.5
for
541712

.
zma-u.5
for
100382265

.
osa-u.5
for
4351224

.
ath-u.5
for
RCA

.
gma-u.5
for
RCA03

.
gma-u.5
for
RCA14

.
gma-u.5
for
RCABETA

.
sly-u.5
for
101249777

.
sly-u.5
for
101250725

.
vvi-u.5
for
100256315

.
vvi-u.5
for
100266698

.
vvi-u.5
for
100263871

.
ppo-u.5
for
7487971

.
ppo-u.5
for
7458129

.
mtr-u.5
for
11442149

.
mtr-u.5
for
11412610

.
mtr-u.5
for
25489329

.


Ortholog ID: 2625
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi bdi nta nta
Symbol RCA RCABETA RCAALPHA LOC101250725 LOC101249777 LOC4351224 LOC541712 LOC100382265 LOC103867016 RCA LOC100256315 LOC100263871 LOC7458129 LOC11412610 LOC25489329 LOC732707 LOC123091750 LOC123448238 LOC123448239 LOC107948056 LOC107900463 LOC106396217 LOC106447457 CHLRE_04g229300v5 LOC8086040 LOC8086041 LOC102590242 LOC102596435 LOC102630057 LOC102627294 LOC104584416 LOC100836073 LOC107793435 LOC107819807
Function* rubisco activase ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like RUBISCO activase 1 RUBISCO activase1 ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic uncharacterized protein ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase B, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic-like ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00710 Carbon fixation by Calvin cycle 10
ath01200 Carbon metabolism 10
ath00195 Photosynthesis 6
ath01230 Biosynthesis of amino acids 3
ath00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00710 Carbon fixation by Calvin cycle 7
gma01200 Carbon metabolism 7
gma00195 Photosynthesis 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00710 Carbon fixation by Calvin cycle 5
sly01200 Carbon metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 12
sly00710 Carbon fixation by Calvin cycle 11
sly00030 Pentose phosphate pathway 5
sly00010 Glycolysis / Gluconeogenesis 4
sly00051 Fructose and mannose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00710 Carbon fixation by Calvin cycle 7
osa00195 Photosynthesis 4
osa00630 Glyoxylate and dicarboxylate metabolism 3
osa00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 11
zma00710 Carbon fixation by Calvin cycle 10
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00010 Glycolysis / Gluconeogenesis 3
zma00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 9
zma00710 Carbon fixation by Calvin cycle 7
zma00630 Glyoxylate and dicarboxylate metabolism 3
zma00195 Photosynthesis 3
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
bra00195 Photosynthesis 2
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
bra00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00710 Carbon fixation by Calvin cycle 9
bra01200 Carbon metabolism 9
bra00195 Photosynthesis 6
bra00010 Glycolysis / Gluconeogenesis 4
bra01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 10
vvi00710 Carbon fixation by Calvin cycle 9
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01200 Carbon metabolism 11
vvi00710 Carbon fixation by Calvin cycle 9
vvi00010 Glycolysis / Gluconeogenesis 4
vvi00030 Pentose phosphate pathway 3
vvi00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 6
ppo00630 Glyoxylate and dicarboxylate metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00710 Carbon fixation by Calvin cycle 3
mtr00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 8
mtr00710 Carbon fixation by Calvin cycle 6
mtr00010 Glycolysis / Gluconeogenesis 3
mtr00030 Pentose phosphate pathway 3
mtr00051 Fructose and mannose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
tae00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 4
tae00195 Photosynthesis 3
tae00260 Glycine, serine and threonine metabolism 2
tae00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 9
hvu00710 Carbon fixation by Calvin cycle 6
hvu00630 Glyoxylate and dicarboxylate metabolism 6
hvu00195 Photosynthesis 4
hvu00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 8
hvu00630 Glyoxylate and dicarboxylate metabolism 7
hvu00710 Carbon fixation by Calvin cycle 4
hvu00260 Glycine, serine and threonine metabolism 4
hvu00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00052 Galactose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 3
ghi00195 Photosynthesis 3
ghi00620 Pyruvate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 7
cre01200 Carbon metabolism 7
cre00030 Pentose phosphate pathway 4
cre01230 Biosynthesis of amino acids 3
cre00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00195 Photosynthesis 5
sbi00196 Photosynthesis - antenna proteins 5
sbi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00196 Photosynthesis - antenna proteins 3
sbi00860 Porphyrin metabolism 2
sbi00710 Carbon fixation by Calvin cycle 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 7
sot00195 Photosynthesis 6
sot00710 Carbon fixation by Calvin cycle 5
sot00630 Glyoxylate and dicarboxylate metabolism 3
sot00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 8
sot00710 Carbon fixation by Calvin cycle 7
sot00630 Glyoxylate and dicarboxylate metabolism 5
sot00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
cit00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00195 Photosynthesis 10
cit01200 Carbon metabolism 6
cit00710 Carbon fixation by Calvin cycle 4
cit00010 Glycolysis / Gluconeogenesis 3
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 9
bdi00630 Glyoxylate and dicarboxylate metabolism 8
bdi00710 Carbon fixation by Calvin cycle 6
bdi00260 Glycine, serine and threonine metabolism 2
bdi00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 6
bdi00630 Glyoxylate and dicarboxylate metabolism 4
bdi00195 Photosynthesis 2
bdi00010 Glycolysis / Gluconeogenesis 2
bdi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 3
nta04146 Peroxisome 3
nta00380 Tryptophan metabolism 2
nta04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 4
nta01200 Carbon metabolism 4
nta04146 Peroxisome 4
nta00250 Alanine, aspartate and glutamate metabolism 2
nta00260 Glycine, serine and threonine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818558 100797222 100806240 101250725 101249777 4351224 541712 100382265 103867016 103865740 100256315 100263871 7458129 11412610 25489329 732707 123091750 123448238 123448239 107948056 107900463 106396217 106447457 5717936 8086040 8086041 102590242 102596435 102630057 102627294 104584416 100836073 107793435 107819807
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