ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-r.7	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-m.9	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-e.2	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-m.4.bio	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-m.4.hor	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-m.4.lig	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-m.4.str	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-m.4.tis	AT2G01300	mediator of RNA polymerase II transcription subunit
ath-u.5	AT1G15010	mediator of RNA polymerase II transcription subunit
bra-r.6	103827593	uncharacterized LOC103827593
bra-r.6	103836046	uncharacterized LOC103836046
bra-r.6	103839499	uncharacterized LOC103839499
bna-r.1	106382312	uncharacterized LOC106382312
bna-r.1	BNAC07G20690D	uncharacterized BNAC07G20690D
bna-r.1	BNAC08G16480D	uncharacterized BNAC08G16480D
ghi-r.1	107911547	uncharacterized LOC107911547
ghi-r.1	107917454	uncharacterized LOC107917454
ghi-r.1	107917678	uncharacterized LOC107917678
cit-r.1	107177557	hypothetical protein
cit-r.1	107177556	uncharacterized LOC107177556
cit-r.1	102628295	uncharacterized LOC102628295
gma-u.5	100795681	uncharacterized LOC100795681
gma-u.5	100789312	uncharacterized LOC100789312
gma-u.5	100788782	uncharacterized LOC100788782
vvi-u.5	104881595	uncharacterized LOC104881595
ppo-u.5	7493530	uncharacterized LOC7493530
mtr-u.5	11427909	uncharacterized LOC11427909
sly-u.5	104645999	uncharacterized LOC104645999
sly-u.5	104647447	uncharacterized LOC104647447
sly-u.5	109120004	uncharacterized LOC109120004
sot-r.1	107060017	uncharacterized LOC107060017
sot-r.1	107062687	uncharacterized LOC107062687
nta-r.1	107831182	uncharacterized LOC107831182
nta-r.1	107805050	uncharacterized LOC107805050
osa-u.5	4326044	uncharacterized LOC4326044
osa-u.5	4326043	uncharacterized LOC4326043
zma-u.5	100193207	uncharacterized LOC100193207
zma-u.5	109941485	uncharacterized LOC109941485
zma-u.5	100277188	uncharacterized LOC100277188
hvu-r.1	123439236	uncharacterized LOC123439236
sbi-r.1	8079043	uncharacterized LOC8079043
bdi-r.1	100832762	uncharacterized LOC100832762

Top 50 coexpressed genes to AT2G01300 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G01300 (ath-u.5 coexpression data)

CoexMap"814658"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(5014 genes)

ISM

GO MF

Protein

NP_178239.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 9, mito 1

(predict for NP_178239.1)

Subcellular
localization
TargetP

chlo 5, other 3

(predict for NP_178239.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G01300	ath-r.7 for AT2G01300	ath-m.9 for AT2G01300	ath-e.2 for AT2G01300	ath-m.4.bio for AT2G01300	ath-m.4.hor for AT2G01300	ath-m.4.lig for AT2G01300	ath-m.4.str for AT2G01300	ath-m.4.tis for AT2G01300	ath-u.5 for AT1G15010	bra-r.6 for 103827593	bra-r.6 for 103836046	bra-r.6 for 103839499	bna-r.1 for 106382312	bna-r.1 for BNAC07G20690D	bna-r.1 for BNAC08G16480D	ghi-r.1 for 107911547	ghi-r.1 for 107917454	ghi-r.1 for 107917678	cit-r.1 for 107177557	cit-r.1 for 107177556	cit-r.1 for 102628295	gma-u.5 for 100795681	gma-u.5 for 100789312	gma-u.5 for 100788782	vvi-u.5 for 104881595	ppo-u.5 for 7493530	mtr-u.5 for 11427909	sly-u.5 for 104645999	sly-u.5 for 104647447	sly-u.5 for 109120004	sot-r.1 for 107060017	sot-r.1 for 107062687	nta-r.1 for 107831182	nta-r.1 for 107805050	osa-u.5 for 4326044	osa-u.5 for 4326043	zma-u.5 for 100193207	zma-u.5 for 109941485	zma-u.5 for 100277188	hvu-r.1 for 123439236	sbi-r.1 for 8079043	bdi-r.1 for 100832762

Ortholog

Ortholog ID: 1783

Species

ath

bra

bna

ghi

cit

gma

vvi

mtr

sly

sot

nta

osa

zma

hvu

sbi

bdi

Symbol

Function^*

mediator of RNA polymerase II transcription subunit

uncharacterized LOC103827593

uncharacterized LOC103839499

uncharacterized LOC103872292

uncharacterized LOC106374930

uncharacterized BNAA09G18540D

uncharacterized LOC106436879

uncharacterized LOC121228294

uncharacterized LOC107887652

uncharacterized LOC107955990

hypothetical protein

uncharacterized LOC107177556

uncharacterized LOC102628295

uncharacterized LOC100795681

uncharacterized LOC100789312

uncharacterized LOC100788782

uncharacterized LOC100253584

uncharacterized LOC11427909

uncharacterized LOC104645999

uncharacterized LOC104647447

uncharacterized LOC109120004

uncharacterized LOC107060017

uncharacterized LOC107062687

uncharacterized LOC107831182

uncharacterized LOC107805050

uncharacterized LOC4326044

uncharacterized LOC4326043

uncharacterized LOC100193207

uncharacterized LOC109941485

uncharacterized LOC100277188

uncharacterized LOC123439236

uncharacterized LOC8079043

uncharacterized LOC100832762

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	3
ath00380	Tryptophan metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04626	Plant-pathogen interaction	4
bra04016	MAPK signaling pathway - plant	3
bra04070	Phosphatidylinositol signaling system	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	4
bra04626	Plant-pathogen interaction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00053	Ascorbate and aldarate metabolism	2
ghi00520	Amino sugar and nucleotide sugar metabolism	2
ghi01240	Biosynthesis of cofactors	2
ghi01250	Biosynthesis of nucleotide sugars	2
ghi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	4
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00740	Riboflavin metabolism	2
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00943	Isoflavonoid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00270	Cysteine and methionine metabolism	2
sot00543	Exopolysaccharide biosynthesis	2
sot00920	Sulfur metabolism	2
sot01200	Carbon metabolism	2
sot01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00562	Inositol phosphate metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta00565	Ether lipid metabolism	2
nta00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00480	Glutathione metabolism	2
zma00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00592	alpha-Linolenic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi01250	Biosynthesis of nucleotide sugars	3
sbi00541	Biosynthesis of various nucleotide sugars	2
sbi00564	Glycerophospholipid metabolism	2
sbi00565	Ether lipid metabolism	2
sbi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

814658

838066

103827593

103839499

103872292

106374930

106432025

106436879

121228294

107887652

107955990

107177557

107177556

102628295

100795681

100789312

100788782

100253584

11427909

104645999

104647447

109120004

107060017

107062687

107831182

107805050

4326044

4326043

100193207

109941485

100277188

123439236

8079043

100832762

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	hvu	sbi	bdi	cre	tae
Paralog	10	3	3	3	3	3	1	1	1	3	2	2	2	3	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G01300 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G01300 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**