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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PIL5   phytochrome interacting factor 3-like 5 
 ath-r.7   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.9   PIL5   phytochrome interacting factor 3-like 5 
 ath-e.2   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.bio   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.hor   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.lig   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.str   PIL5   phytochrome interacting factor 3-like 5 
 ath-m.4.tis   PIL5   phytochrome interacting factor 3-like 5 
 gma-u.5   100788491   transcription factor PIF1 
 gma-u.5   100792121   transcription factor PIF1 
 vvi-u.5   100264869   transcription factor PIF1 
 ppo-u.5   7459525   transcription factor PIF1 
 mtr-u.5   25484155   transcription factor PIF1 
 mtr-u.5   11419484   transcription factor PIF1 
 sly-u.5   101264668   transcription factor PIF1 
 sly-u.5   101260141   transcription factor PIF1 

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Top 50 coexpressed genes to PIL5 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PIL5 (ath-u.5 coexpression data)

CoexMap"816538"


athPIL5 | Entrez gene ID : 816538      
Species ath gma vvi ppo mtr sly tae osa hvu zma ghi bdi cit bra cre sbi bna nta sot
Paralog 9 2 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0006783 [list] [network] heme biosynthetic process  (8 genes)  IMP  
GO:0010161 [list] [network] red light signaling pathway  (10 genes)  IDA  
GO:0010100 [list] [network] negative regulation of photomorphogenesis  (16 genes)  IMP  
GO:0009686 [list] [network] gibberellin biosynthetic process  (20 genes)  IMP  
GO:0009959 [list] [network] negative gravitropism  (25 genes)  IMP TAS  
GO:0015995 [list] [network] chlorophyll biosynthetic process  (27 genes)  IMP  
GO:0010187 [list] [network] negative regulation of seed germination  (29 genes)  IGI IMP  
GO:0009740 [list] [network] gibberellic acid mediated signaling pathway  (41 genes)  IMP  
GO:0010099 [list] [network] regulation of photomorphogenesis  (41 genes)  TAS  
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  TAS  
GO:0009408 [list] [network] response to heat  (271 genes)  IEP  
GO:0009733 [list] [network] response to auxin  (344 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO:0009737 [list] [network] response to abscisic acid  (550 genes)  IEP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0010313 [list] [network] phytochrome binding  (4 genes)  IDA  
GO:0042802 [list] [network] identical protein binding  (414 genes)  IPI  
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IDA IEA ISS TAS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189559.1 [sequence] [blastp]
NP_001318252.1 [sequence] [blastp]
NP_001323901.1 [sequence] [blastp]
NP_001323902.1 [sequence] [blastp]
NP_001323903.1 [sequence] [blastp]
NP_001323904.1 [sequence] [blastp]
NP_001323905.1 [sequence] [blastp]
NP_849996.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001189559.1)
nucl 10  (predict for NP_001318252.1)
nucl 10  (predict for NP_001323901.1)
nucl 10  (predict for NP_001323902.1)
nucl 10  (predict for NP_001323903.1)
nucl 10  (predict for NP_001323904.1)
nucl 10  (predict for NP_001323905.1)
nucl 10  (predict for NP_849996.1)
Subcellular
localization
TargetP
other 9  (predict for NP_001189559.1)
other 9  (predict for NP_001318252.1)
other 9  (predict for NP_001323901.1)
other 9  (predict for NP_001323902.1)
other 9  (predict for NP_001323903.1)
other 9  (predict for NP_001323904.1)
other 9  (predict for NP_001323905.1)
other 9  (predict for NP_849996.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PIL5

.
ath-r.7
for
PIL5

.
ath-m.9
for
PIL5

.
ath-e.2
for
PIL5

.
ath-m.4.bio
for
PIL5

.
ath-m.4.hor
for
PIL5

.
ath-m.4.lig
for
PIL5

.
ath-m.4.str
for
PIL5

.
ath-m.4.tis
for
PIL5

.
gma-u.5
for
100788491

.
gma-u.5
for
100792121

.
vvi-u.5
for
100264869

.
ppo-u.5
for
7459525

.
mtr-u.5
for
25484155

.
mtr-u.5
for
11419484

.
sly-u.5
for
101264668

.
sly-u.5
for
101260141

.


Ortholog ID: 8878
Species ath gma gma sly sly bra vvi ppo mtr mtr ghi ghi bna sot sot cit nta nta
Symbol PIL5 LOC100788491 LOC100797225 LOC101264668 LOC101260141 LOC117126501 LOC100264869 LOC7459525 LOC11419484 LOC25484155 LOC107924576 LOC107925868 LOC106357954 LOC102585610 LOC102583507 LOC102621687 LOC107808530 LOC107828013
Function* phytochrome interacting factor 3-like 5 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1 transcription factor PIF1-like transcription factor PIF1-like transcription factor PIF1 transcription factor PIF1-like transcription factor PIF1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 3
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04075 Plant hormone signal transduction 4
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04712 Circadian rhythm - plant 3
sly00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04075 Plant hormone signal transduction 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 6
ghi00905 Brassinosteroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 9
sot04075 Plant hormone signal transduction 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 5
nta04075 Plant hormone signal transduction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816538 100788491 100797225 101264668 101260141 117126501 100264869 7459525 11419484 25484155 107924576 107925868 106357954 102585610 102583507 102621687 107808530 107828013
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