ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	SYTA	synaptotagmin A
ath-r.7	SYTA	synaptotagmin A
ath-e.2	SYTA	synaptotagmin A
ath-u.5	SYTC	Calcium-dependent lipid-binding (CaLB domain) family protein
gma-u.5	100819310	synaptotagmin-3
gma-u.5	100813029	synaptotagmin-3
gma-u.5	100803978	synaptotagmin-2
vvi-u.5	100258229	synaptotagmin-3
ppo-u.5	7490635	synaptotagmin-2
ppo-u.5	7493981	synaptotagmin-2
mtr-u.5	25492772	synaptotagmin-2
mtr-u.5	11414595	synaptotagmin-2
mtr-u.5	11442815	synaptotagmin-1
sly-u.5	101249535	synaptotagmin-1
sly-u.5	101264564	synaptotagmin-1
sly-u.5	101245487	synaptotagmin-3
osa-u.5	9268561	synaptotagmin-2
osa-u.5	4327448	synaptotagmin-2
osa-u.5	4329259	synaptotagmin-2
zma-u.5	100285684	calcium lipid binding protein-like
zma-u.5	103626330	synaptotagmin-3
zma-u.5	103634452	synaptotagmin-1

Annotation

functional annotation

KEGG

GO BP

GO:0001778 [list] [network] plasma membrane repair	(1 genes)	IMP
GO:0061817 [list] [network] endoplasmic reticulum-plasma membrane tethering	(2 genes)	IMP
GO:0046740 [list] [network] transport of virus in host, cell to cell	(4 genes)	IMP
GO:0032456 [list] [network] endocytic recycling	(6 genes)	IMP
GO:0006612 [list] [network] protein targeting to membrane	(14 genes)	ISS
GO:0007029 [list] [network] endoplasmic reticulum organization	(17 genes)	IMP
GO:0009612 [list] [network] response to mechanical stimulus	(28 genes)	IMP
GO:0006897 [list] [network] endocytosis	(31 genes)	IMP
GO:0009615 [list] [network] response to virus	(102 genes)	IPI
GO:0009409 [list] [network] response to cold	(436 genes)	IMP

GO CC

GO:0032541 [list] [network] cortical endoplasmic reticulum	(2 genes)	IDA
GO:0140268 [list] [network] endoplasmic reticulum-plasma membrane contact site	(2 genes)	IDA
GO:0009898 [list] [network] cytoplasmic side of plasma membrane	(20 genes)	IDA
GO:0005768 [list] [network] endosome	(359 genes)	IDA
GO:0000325 [list] [network] plant-type vacuole	(788 genes)	HDA
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005783 [list] [network] endoplasmic reticulum	(897 genes)	HDA IDA
GO:0005886 [list] [network] plasma membrane	(2598 genes)	HDA IDA ISM

GO MF

GO:0019992 [list] [network] diacylglycerol binding	(2 genes)	IDA
GO:1901981 [list] [network] phosphatidylinositol phosphate binding	(37 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_001189565.1 [sequence] [blastp]
NP_001189566.1 [sequence] [blastp]
NP_565495.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, E.R. 2, vacu 1, cyto_E.R. 1	(predict for NP_001189565.1)
cyto 4, E.R. 3, extr 1, E.R._vacu 1	(predict for NP_001189566.1)
cyto 4, E.R. 3, extr 1, E.R._vacu 1	(predict for NP_565495.1)

Subcellular
localization
TargetP

scret 9	(predict for NP_001189565.1)
scret 9	(predict for NP_001189566.1)
scret 9	(predict for NP_565495.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SYTA	ath-r.7 for SYTA	ath-e.2 for SYTA	ath-u.5 for SYTC	gma-u.5 for 100819310	gma-u.5 for 100813029	gma-u.5 for 100803978	vvi-u.5 for 100258229	ppo-u.5 for 7490635	ppo-u.5 for 7493981	mtr-u.5 for 25492772	mtr-u.5 for 11414595	mtr-u.5 for 11442815	sly-u.5 for 101249535	sly-u.5 for 101264564	sly-u.5 for 101245487	osa-u.5 for 9268561	osa-u.5 for 4327448	osa-u.5 for 4329259	zma-u.5 for 100285684	zma-u.5 for 103626330	zma-u.5 for 103634452

Ortholog

Ortholog ID: 864

Species

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SYTC

Function^*

Calcium-dependent lipid-binding (CaLB domain) family protein

synaptotagmin-1

synaptotagmin-3

synaptotagmin-1

synaptotagmin-3

synaptotagmin-2

synaptotagmin-3

synaptotagmin-2

synaptotagmin-3

synaptotagmin-1

synaptotagmin-1-like

synaptotagmin-1

synaptotagmin-2

uncharacterized LOC100192771

synaptotagmin-1

synaptotagmin-3

synaptotagmin-2

synaptotagmin-2-like

synaptotagmin-3-like

synaptotagmin-1

synaptotagmin-2

synaptotagmin-3

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04016	MAPK signaling pathway - plant	3
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01200	Carbon metabolism	4
cit01230	Biosynthesis of amino acids	4
cit00010	Glycolysis / Gluconeogenesis	3
cit00710	Carbon fixation by Calvin cycle	3
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma01240	Biosynthesis of cofactors	4
gma00620	Pyruvate metabolism	4
gma01200	Carbon metabolism	4
gma00940	Phenylpropanoid biosynthesis	4
gma00061	Fatty acid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi00564	Glycerophospholipid metabolism	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04517	IgSF CAM signaling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00860	Porphyrin metabolism	4
nta04141	Protein processing in endoplasmic reticulum	2
nta00904	Diterpenoid biosynthesis	2
nta04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00195	Photosynthesis	2
tae00330	Arginine and proline metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	6
tae03083	Polycomb repressive complex	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00410	beta-Alanine metabolism	2
hvu00640	Propanoate metabolism	2
hvu00280	Valine, leucine and isoleucine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	6
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	5
hvu00260	Glycine, serine and threonine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	2
sbi03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00190	Oxidative phosphorylation	3
sbi04145	Phagosome	3
sbi04120	Ubiquitin mediated proteolysis	2
sbi04141	Protein processing in endoplasmic reticulum	2
sbi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2

Expression

Expression pattern

Entrez Gene ID^*

830301

103842562

103847319

106415118

106429454

102608152

100819310

100260940

7463439

25492772

11414595

101245487

101264564

102597682

107820292

4327448

4329259

100192771

103634452

123161154

123104610

123400167

123412720

8086287

8063320

100834146

100824473

5715641

5715642

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to SYTA (ath-u.5 coexpression data)

Top 50 enrichment test to SYTA (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	4	3	1	2	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SYTA (ath-u.5 coexpression data)

Top 50 enrichment test to SYTA (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**