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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-r.7   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-m.9   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-e.2   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-m.4.bio   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-m.4.hor   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-m.4.lig   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-m.4.str   SE   C2H2 zinc-finger protein SERRATE (SE) 
 ath-m.4.tis   SE   C2H2 zinc-finger protein SERRATE (SE) 
 bra-r.6   103829649   serrate RNA effector molecule 
 bra-r.6   103864752   serrate RNA effector molecule 
 bna-r.1   106446771   serrate RNA effector molecule-like 
 bna-r.1   106358446   serrate RNA effector molecule 
 bna-r.1   106445446   serrate RNA effector molecule 
 ghi-r.1   107963306   serrate RNA effector molecule 
 ghi-r.1   107931114   serrate RNA effector molecule 
 ghi-r.1   107932496   serrate RNA effector molecule 
 cit-r.1   102626268   serrate RNA effector molecule 
 gma-u.5   100811300   serrate RNA effector molecule 
 gma-u.5   100817569   serrate RNA effector molecule 
 gma-u.5   100788714   serrate RNA effector molecule 
 vvi-u.5   100266053   serrate RNA effector molecule 
 vvi-u.5   100254817   serrate RNA effector molecule 
 ppo-u.5   18098063   serrate RNA effector molecule 
 ppo-u.5   7460090   serrate RNA effector molecule 
 mtr-u.5   25488483   serrate RNA effector molecule 
 mtr-u.5   11405241   serrate RNA effector molecule 
 sly-u.5   101252107   serrate RNA effector molecule 
 sot-r.1   102598346   serrate RNA effector molecule 
 nta-r.1   107774571   serrate RNA effector molecule 
 nta-r.1   107790573   serrate RNA effector molecule 
 osa-u.5   4346039   serrate RNA effector molecule 
 osa-u.5   9270793   serrate RNA effector molecule 
 zma-u.5   100279372   putative SERRATE-related C2H2 zinc-finger family protein 
 zma-u.5   100382107   Putative SERRATE-related C2H2 zinc-finger family protein 
 zma-u.5   541879   serrate RNA effector molecule 
 tae-r.2   123168999   serrate RNA effector molecule 
 tae-r.2   123162886   serrate RNA effector molecule 
 hvu-r.1   123407046   serrate RNA effector molecule-like 
 hvu-r.1   123409327   serrate RNA effector molecule-like 
 sbi-r.1   8065556   serrate RNA effector molecule 
 sbi-r.1   8062421   serrate RNA effector molecule 
 bdi-r.1   100839798   serrate RNA effector molecule 
 bdi-r.1   100834422   serrate RNA effector molecule 
 cre-r.1   CHLRE_13g575900v5   uncharacterized protein 

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Top 50 coexpressed genes to SE (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SE (ath-u.5 coexpression data)

CoexMap"817252"


athSE | Entrez gene ID : 817252      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 3 2 2 2 1 1 2 2 3 2 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:2000011 [list] [network] regulation of adaxial/abaxial pattern formation  (3 genes)  IMP  
GO:0000381 [list] [network] regulation of alternative mRNA splicing, via spliceosome  (8 genes)  IMP  
GO:0031053 [list] [network] primary miRNA processing  (9 genes)  IMP  
GO:0010267 [list] [network] ta-siRNA processing  (15 genes)  IMP  
GO:0048509 [list] [network] regulation of meristem development  (63 genes)  IMP  
GO:0008380 [list] [network] RNA splicing  (195 genes)  IMP  
GO:0048367 [list] [network] shoot system development  (800 genes)  IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  TAS  
GO CC
GO:0005846 [list] [network] nuclear cap binding complex  (1 genes)  IPI  
GO:0010445 [list] [network] nuclear dicing body  (7 genes)  IDA  
GO:0016607 [list] [network] nuclear speck  (52 genes)  IDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISS  
GO MF
GO:0003677 [list] [network] DNA binding  (1274 genes)  ISS  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_565635.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_565635.1)
Subcellular
localization
TargetP
chlo 7,  other 6  (predict for NP_565635.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SE
ath-r.7
for
SE
ath-m.9
for
SE
ath-e.2
for
SE
ath-m.4.bio
for
SE
ath-m.4.hor
for
SE
ath-m.4.lig
for
SE
ath-m.4.str
for
SE
ath-m.4.tis
for
SE
bra-r.6
for
103829649
bra-r.6
for
103864752
bna-r.1
for
106446771
bna-r.1
for
106358446
bna-r.1
for
106445446
ghi-r.1
for
107963306
ghi-r.1
for
107931114
ghi-r.1
for
107932496
cit-r.1
for
102626268
gma-u.5
for
100811300
gma-u.5
for
100817569
gma-u.5
for
100788714
vvi-u.5
for
100266053
vvi-u.5
for
100254817
ppo-u.5
for
18098063
ppo-u.5
for
7460090
mtr-u.5
for
25488483
mtr-u.5
for
11405241
sly-u.5
for
101252107
sot-r.1
for
102598346
nta-r.1
for
107774571
nta-r.1
for
107790573
osa-u.5
for
4346039
osa-u.5
for
9270793
zma-u.5
for
100279372
zma-u.5
for
100382107
zma-u.5
for
541879
tae-r.2
for
123168999
tae-r.2
for
123162886
hvu-r.1
for
123407046
hvu-r.1
for
123409327
sbi-r.1
for
8065556
sbi-r.1
for
8062421
bdi-r.1
for
100839798
bdi-r.1
for
100834422
cre-r.1
for
CHLRE_13g575900v5


Ortholog ID: 2792
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi vvi ppo ppo mtr mtr sly sot nta nta osa osa zma zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol SE LOC103829649 LOC103864752 LOC106446771 LOC106358446 LOC106445446 LOC107932496 LOC107936065 LOC107959056 LOC102626268 LOC100811300 LOC100817569 LOC100788714 LOC100266053 LOC100254817 LOC18098063 LOC7460090 LOC25488483 LOC11405241 LOC101252107 LOC102598346 LOC107774571 LOC107790573 LOC4346039 LOC9270793 LOC100279372 LOC100382107 LOC732796 LOC123162886 LOC123097655 LOC123407046 LOC123409327 LOC8065556 LOC8062421 LOC100839798 LOC100834422 CHLRE_13g575900v5
Function* C2H2 zinc-finger protein SERRATE (SE) serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule-like serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule putative SERRATE-related C2H2 zinc-finger family protein Putative SERRATE-related C2H2 zinc-finger family protein serrate RNA effector molecule serrate RNA effector molecule translation initiation factor IF-2 serrate RNA effector molecule-like serrate RNA effector molecule-like serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule serrate RNA effector molecule uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 8
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04120 Ubiquitin mediated proteolysis 8
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03250 Viral life cycle - HIV-1 3
gma03008 Ribosome biogenesis in eukaryotes 2
gma04712 Circadian rhythm - plant 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr03015 mRNA surveillance pathway 3
mtr03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
sly03250 Viral life cycle - HIV-1 3
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae03013 Nucleocytoplasmic transport 3
tae03015 mRNA surveillance pathway 3
tae03250 Viral life cycle - HIV-1 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04141 Protein processing in endoplasmic reticulum 3
sbi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817252 103829649 103864752 106446771 106358446 106445446 107932496 107936065 107959056 102626268 100811300 100817569 100788714 100266053 100254817 18098063 7460090 25488483 11405241 101252107 102598346 107774571 107790573 4346039 9270793 100279372 100382107 732796 123162886 123097655 123407046 123409327 8065556 8062421 100839798 100834422 5719231
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