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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   E2F3   E2F transcription factor 3 
 ath-r.7   E2F3   E2F transcription factor 3 
 ath-m.9   E2F3   E2F transcription factor 3 
 ath-e.2   E2F3   E2F transcription factor 3 
 ath-m.4.bio   E2F3   E2F transcription factor 3 
 ath-m.4.hor   E2F3   E2F transcription factor 3 
 ath-m.4.lig   E2F3   E2F transcription factor 3 
 ath-m.4.str   E2F3   E2F transcription factor 3 
 ath-m.4.tis   E2F3   E2F transcription factor 3 
 ath-u.5   E2F1   E2F transcription factor 1 
 gma-u.5   100811762   transcription factor E2FA 
 gma-u.5   100812368   transcription factor E2FB 
 gma-u.5   100819817   transcription factor E2FB 
 vvi-u.5   100249486   transcription factor E2FA 
 vvi-u.5   100245057   transcription factor E2FB 
 ppo-u.5   7465237   transcription factor E2FA 
 ppo-u.5   18098100   transcription factor E2FB 
 ppo-u.5   7460071   transcription factor E2FB 
 mtr-u.5   11409018   transcription factor E2FA 
 mtr-u.5   11446346   transcription factor E2FB 
 sly-u.5   101244053   transcription factor E2FB 
 sly-u.5   101258866   transcription factor E2FB-like 
 sly-u.5   101259362   transcription factor E2FA 
 osa-u.5   4351555   transcription factor E2FA 
 osa-u.5   4335808   transcription factor E2FA 
 osa-u.5   4329577   transcription factor E2FB 
 zma-u.5   100285220   transcription factor E2F3 
 zma-u.5   100279729   transcription factor E2F3 

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Top 50 coexpressed genes to E2F3 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to E2F3 (ath-u.5 coexpression data)

CoexMap"818174"


athE2F3 | Entrez gene ID : 818174      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 10 3 2 3 2 3 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051446 [list] [network] positive regulation of meiotic cell cycle  (7 genes)  IDA  
GO:0012501 [list] [network] programmed cell death  (103 genes)  IGI  
GO:0051726 [list] [network] regulation of cell cycle  (135 genes)  IMP  
GO:0045893 [list] [network] positive regulation of DNA-templated transcription  (262 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0140612 [list] [network] DNA damage sensor activity  (10 genes)  IMP  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_565831.3 [sequence] [blastp]
NP_973610.1 [sequence] [blastp]
NP_973611.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  pero 4  (predict for NP_565831.3)
chlo 6,  mito 1,  nucl 1,  cyto 1,  pero 1,  cyto_nucl 1,  cyto_mito 1,  cyto_pero 1,  mito_plas 1  (predict for NP_973610.1)
chlo 7,  pero 2  (predict for NP_973611.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_565831.3)
chlo 9  (predict for NP_973610.1)
chlo 8  (predict for NP_973611.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
E2F3
ath-r.7
for
E2F3
ath-m.9
for
E2F3
ath-e.2
for
E2F3
ath-m.4.bio
for
E2F3
ath-m.4.hor
for
E2F3
ath-m.4.lig
for
E2F3
ath-m.4.str
for
E2F3
ath-m.4.tis
for
E2F3
ath-u.5
for
E2F1
gma-u.5
for
100811762
gma-u.5
for
100812368
gma-u.5
for
100819817
vvi-u.5
for
100249486
vvi-u.5
for
100245057
ppo-u.5
for
7465237
ppo-u.5
for
18098100
ppo-u.5
for
7460071
mtr-u.5
for
11409018
mtr-u.5
for
11446346
sly-u.5
for
101244053
sly-u.5
for
101258866
sly-u.5
for
101259362
osa-u.5
for
4351555
osa-u.5
for
4335808
osa-u.5
for
4329577
zma-u.5
for
100285220
zma-u.5
for
100279729


Ortholog ID: 1457
Species ath ath bra bra bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot sot nta nta osa osa zma zma tae tae hvu hvu sbi sbi bdi bdi cre
Symbol E2F1 E2F3 LOC103856506 LOC103865508 LOC106371664 LOC107953162 LOC107889196 LOC102630455 LOC102617974 LOC100809283 LOC100812368 LOC100245057 LOC100249486 LOC7466004 LOC7465237 LOC11446346 LOC11409018 LOC101265247 LOC101259362 LOC107063348 LOC102584400 LOC107816762 LOC107792954 LOC4351555 LOC4329577 LOC100285220 LOC100192057 LOC123102977 LOC123045420 LOC123401733 LOC123395596 LOC8061020 LOC8079845 LOC100823596 LOC100830591 CHLRE_01g052300v5
Function* E2F transcription factor 1 E2F transcription factor 3 transcription factor E2FB transcription factor E2FA transcription factor E2FB transcription factor E2FB transcription factor E2FB transcription factor E2FB transcription factor E2FA transcription factor E2FA transcription factor E2FB transcription factor E2FB transcription factor E2FA transcription factor E2FA transcription factor E2FA transcription factor E2FB transcription factor E2FA transcription factor E2FB-like transcription factor E2FA transcription factor E2FB-like transcription factor E2FA transcription factor E2FA transcription factor E2FB-like transcription factor E2FA transcription factor E2FB transcription factor E2F3 uncharacterized LOC100192057 transcription factor E2FA transcription factor E2FA transcription factor E2FA-like transcription factor E2FA-like transcription factor E2FA transcription factor E2FB transcription factor E2FA transcription factor E2FA uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03410 Base excision repair 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 4
ppo03460 Fanconi anemia pathway 3
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 7
mtr03010 Ribosome 2
mtr01210 2-Oxocarboxylic acid metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00062 Fatty acid elongation 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta00999 Biosynthesis of various plant secondary metabolites 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03430 Mismatch repair 4
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae00561 Glycerolipid metabolism 3
tae00053 Ascorbate and aldarate metabolism 3
tae04712 Circadian rhythm - plant 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832283 818174 103856506 103865508 106371664 107953162 107889196 102630455 102617974 100809283 100812368 100245057 100249486 7466004 7465237 11446346 11409018 101265247 101259362 107063348 102584400 107816762 107792954 4351555 4329577 100285220 100192057 123102977 123045420 123401733 123395596 8061020 8079845 100823596 100830591 5715776
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