Select Species**


OK


Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SWC2   DNA binding protein SWC2 
 ath-r.7   SWC2   DNA binding protein SWC2 
 ath-m.9   SWC2   DNA binding protein SWC2 
 ath-e.2   SWC2   DNA binding protein SWC2 
 ath-m.4.bio   SWC2   DNA binding protein SWC2 
 ath-m.4.hor   SWC2   DNA binding protein SWC2 
 ath-m.4.lig   SWC2   DNA binding protein SWC2 
 ath-m.4.str   SWC2   DNA binding protein SWC2 
 ath-m.4.tis   SWC2   DNA binding protein SWC2 
 gma-u.5   100811669   SWR1 complex subunit 2 
 vvi-u.5   100258083   SWR1 complex subunit 2 
 ppo-u.5   18095693   SWR1 complex subunit 2 
 mtr-u.5   120577620   SWR1 complex subunit 2 
 sly-u.5   101250882   SWR1 complex subunit 2 
 osa-u.5   4344862   SWR1 complex subunit 2 
 zma-u.5   100191262   uncharacterized LOC100191262 

close


Top 50 coexpressed genes to SWC2 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

close

close

Top 50 enrichment test to SWC2 (ath-u.5 coexpression data)

CoexMap"818246"


athSWC2 | Entrez gene ID : 818246      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:0045815 [list] [network] transcription initiation-coupled chromatin remodeling  (6 genes)  IEA  
GO CC
GO:0000812 [list] [network] Swr1 complex  (13 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0140849 [list] [network] ATP-dependent H2AZ histone chaperone activity  (1 genes)  IEA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001324358.1 [sequence] [blastp]
NP_181212.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 3,  cyto 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001324358.1)
nucl 8,  cyto 1,  mito 1,  plas 1,  mito_plas 1,  cyto_plas 1  (predict for NP_181212.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001324358.1)
other 9  (predict for NP_181212.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SWC2

.
ath-r.7
for
SWC2

.
ath-m.9
for
SWC2

.
ath-e.2
for
SWC2

.
ath-m.4.bio
for
SWC2

.
ath-m.4.hor
for
SWC2

.
ath-m.4.lig
for
SWC2

.
ath-m.4.str
for
SWC2

.
ath-m.4.tis
for
SWC2

.
gma-u.5
for
100811669

.
vvi-u.5
for
100258083

.
ppo-u.5
for
18095693

.
mtr-u.5
for
120577620

.
sly-u.5
for
101250882

.
osa-u.5
for
4344862

.
zma-u.5
for
100191262

.


Ortholog ID: 7948
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol SWC2 LOC100811669 LOC101250882 LOC4344862 LOC100191262 LOC103867259 LOC100258083 LOC18095693 LOC120577620 LOC123167749 LOC123147682 LOC123407285 LOC107943686 LOC107961952 LOC125598296 LOC106375822 CHLRE_17g728200v5 LOC8064331 LOC102593669 LOC102628304 LOC100836776 LOC100822766 LOC107808723 LOC107782137
Function* DNA binding protein SWC2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 uncharacterized LOC100191262 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2-like SWR1 complex subunit 2 uncharacterized protein SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2 casparian strip membrane protein 2 SWR1 complex subunit 2 SWR1 complex subunit 2 SWR1 complex subunit 2
Coexmap

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
Coexpression

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.

Please wait a moment.
KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04120 Ubiquitin mediated proteolysis 3
tae04130 SNARE interactions in vesicular transport 3
tae04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04122 Sulfur relay system 3
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 3
hvu03015 mRNA surveillance pathway 2
hvu03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
sbi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818246 100811669 101250882 4344862 100191262 103867259 100258083 18095693 120577620 123167749 123147682 123407285 107943686 107961952 125598296 106375822 5722819 8064331 102593669 102628304 100836776 100822766 107808723 107782137
The preparation time of this page was 0.1 [sec].