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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.9   AT2G42360   RING/U-box superfamily protein 
 ath-m.4.bio   AT2G42360   RING/U-box superfamily protein 
 ath-m.4.hor   AT2G42360   RING/U-box superfamily protein 
 ath-m.4.lig   AT2G42360   RING/U-box superfamily protein 
 ath-m.4.str   AT2G42360   RING/U-box superfamily protein 
 ath-m.4.tis   AT2G42360   RING/U-box superfamily protein 
 ath-u.5   AT2G42350   RING/U-box superfamily protein 
 gma-u.5   100796057   RING-H2 finger protein ATL40 
 gma-u.5   100786701   E3 ubiquitin-protein ligase ATL41 
 vvi-u.5   100248798   RING-H2 finger protein ATL40 
 ppo-u.5   7494602   E3 ubiquitin-protein ligase ATL41 
 ppo-u.5   18109949   E3 ubiquitin-protein ligase ATL41 
 mtr-u.5   25487742   RING-H2 finger protein ATL40 
 sly-u.5   101259348   RING-H2 finger protein ATL40 

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Top 50 coexpressed genes to AT2G42360 (ath-m.9 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G42360 (ath-m.9 coexpression data)

CoexMap"818837"


athAT2G42360 | Entrez gene ID : 818837      
Species ath gma vvi ppo mtr sly tae osa hvu zma ghi bdi cit bra cre sbi bna nta sot
Paralog 7 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO CC
GO MF
GO:0004842 [list] [network] ubiquitin-protein transferase activity  (268 genes)  IDA  
Protein NP_181765.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 4,  chlo 3,  nucl 1,  chlo_mito 1  (predict for NP_181765.1)
Subcellular
localization
TargetP
other 9  (predict for NP_181765.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.9
for
AT2G42360

.
ath-m.4.bio
for
AT2G42360

.
ath-m.4.hor
for
AT2G42360

.
ath-m.4.lig
for
AT2G42360

.
ath-m.4.str
for
AT2G42360

.
ath-m.4.tis
for
AT2G42360

.
ath-u.5
for
AT2G42350

.
gma-u.5
for
100796057

.
gma-u.5
for
100786701

.
vvi-u.5
for
100248798

.
ppo-u.5
for
7494602

.
ppo-u.5
for
18109949

.
mtr-u.5
for
25487742

.
sly-u.5
for
101259348

.


Ortholog ID: 5712
Species ath gma sly bra bra vvi ppo ppo mtr ghi ghi sot cit nta nta
Symbol AT2G42350 LOC100786701 LOC101259348 LOC103866627 LOC103866629 LOC100248798 LOC7494602 LOC18109949 LOC25487742 LOC107886690 LOC107924965 LOC102592686 LOC102615766 LOC107816843 LOC107822736
Function* RING/U-box superfamily protein E3 ubiquitin-protein ligase ATL41 RING-H2 finger protein ATL40 RING-H2 finger protein ATL40 E3 ubiquitin-protein ligase ATL41 RING-H2 finger protein ATL40 E3 ubiquitin-protein ligase ATL41 E3 ubiquitin-protein ligase ATL41 RING-H2 finger protein ATL40 E3 ubiquitin-protein ligase ATL41 E3 ubiquitin-protein ligase ATL41 E3 ubiquitin-protein ligase ATL41-like E3 ubiquitin-protein ligase ATL41-like RING-H2 finger protein ATL40 RING-H2 finger protein ATL40
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 3
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04626 Plant-pathogen interaction 4
ppo00480 Glutathione metabolism 4
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04626 Plant-pathogen interaction 3
cit03040 Spliceosome 2
cit04141 Protein processing in endoplasmic reticulum 2
cit04144 Endocytosis 2
cit04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 5
nta00480 Glutathione metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00909 Sesquiterpenoid and triterpenoid biosynthesis 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818836 100786701 101259348 103866627 103866629 100248798 7494602 18109949 25487742 107886690 107924965 102592686 102615766 107816843 107822736
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