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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   BRM   transcription regulatory protein SNF2 
 ath-r.7   BRM   transcription regulatory protein SNF2 
 ath-m.9   BRM   transcription regulatory protein SNF2 
 ath-e.2   BRM   transcription regulatory protein SNF2 
 ath-m.4.bio   BRM   transcription regulatory protein SNF2 
 ath-m.4.hor   BRM   transcription regulatory protein SNF2 
 ath-m.4.lig   BRM   transcription regulatory protein SNF2 
 ath-m.4.str   BRM   transcription regulatory protein SNF2 
 ath-m.4.tis   BRM   transcription regulatory protein SNF2 
 gma-u.5   100811608   ATP-dependent helicase BRM 
 gma-u.5   100807104   ATP-dependent helicase BRM 
 gma-u.5   100805894   ATP-dependent helicase BRM 
 vvi-u.5   100249945   ATP-dependent helicase BRM 
 ppo-u.5   7497210   ATP-dependent helicase BRM 
 ppo-u.5   7496980   ATP-dependent helicase BRM 
 mtr-u.5   11440396   ATP-dependent helicase BRM 
 mtr-u.5   11428961   ATP-dependent helicase BRM 
 sly-u.5   101245796   ATP-dependent helicase BRM 
 osa-u.5   4328058   ATP-dependent helicase BRM 
 zma-u.5   100273430   uncharacterized LOC100273430 

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Top 50 coexpressed genes to BRM (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to BRM (ath-u.5 coexpression data)

CoexMap"819210"


athBRM | Entrez gene ID : 819210      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 9 3 1 2 2 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:1903798 [list] [network] regulation of miRNA processing  (2 genes)  IDA  
GO:1900036 [list] [network] positive regulation of cellular response to heat  (6 genes)  IMP  
GO:0010199 [list] [network] organ boundary specification between lateral organs and the meristem  (9 genes)  IGI  
GO:0010050 [list] [network] vegetative phase change  (10 genes)  IGI  
GO:0010449 [list] [network] root meristem growth  (16 genes)  IGI  
GO:0090691 [list] [network] formation of plant organ boundary  (16 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0140658 [list] [network] ATP-dependent chromatin remodeler activity  (21 genes)  IDA  
GO:0003682 [list] [network] chromatin binding  (103 genes)  IDA  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001318432.1 [sequence] [blastp]
NP_001323760.1 [sequence] [blastp]
NP_001323761.1 [sequence] [blastp]
NP_001323762.1 [sequence] [blastp]
NP_182126.2 [sequence] [blastp]
NP_973695.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 4  (predict for NP_001318432.1)
chlo 6,  nucl 4  (predict for NP_001323760.1)
chlo 6,  nucl 4  (predict for NP_001323761.1)
chlo 6,  nucl 4  (predict for NP_001323762.1)
chlo 6,  nucl 4  (predict for NP_182126.2)
chlo 6,  nucl 4  (predict for NP_973695.1)
Subcellular
localization
TargetP
chlo 7  (predict for NP_001318432.1)
chlo 7  (predict for NP_001323760.1)
chlo 7  (predict for NP_001323761.1)
chlo 7  (predict for NP_001323762.1)
chlo 7  (predict for NP_182126.2)
chlo 7  (predict for NP_973695.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
BRM

.
ath-r.7
for
BRM

.
ath-m.9
for
BRM

.
ath-e.2
for
BRM

.
ath-m.4.bio
for
BRM

.
ath-m.4.hor
for
BRM

.
ath-m.4.lig
for
BRM

.
ath-m.4.str
for
BRM

.
ath-m.4.tis
for
BRM

.
gma-u.5
for
100811608

.
gma-u.5
for
100807104

.
gma-u.5
for
100805894

.
vvi-u.5
for
100249945

.
ppo-u.5
for
7497210

.
ppo-u.5
for
7496980

.
mtr-u.5
for
11440396

.
mtr-u.5
for
11428961

.
sly-u.5
for
101245796

.
osa-u.5
for
4328058

.
zma-u.5
for
100273430

.


Ortholog ID: 5492
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit cit bdi nta nta
Symbol BRM LOC100793092 LOC100805894 LOC101245796 LOC4328058 LOC100273430 LOC103858197 LOC103866259 LOC100249945 LOC7496980 LOC7497210 LOC11440396 LOC11428961 LOC123131709 LOC123135553 LOC123401356 LOC121219114 LOC107923790 LOC111202348 LOC106438266 LOC8066511 LOC102602770 LOC127901208 LOC102610032 LOC100833895 LOC107788810 LOC107762744
Function* transcription regulatory protein SNF2 ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM uncharacterized LOC100273430 ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM-like ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM ATP-dependent helicase BRM-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 3
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 5
ppo03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo03083 Polycomb repressive complex 2
ppo03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03082 ATP-dependent chromatin remodeling 2
mtr04120 Ubiquitin mediated proteolysis 2
mtr03040 Spliceosome 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 8
tae03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
bna03013 Nucleocytoplasmic transport 4
bna03040 Spliceosome 2
bna03015 mRNA surveillance pathway 2
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819210 100793092 100805894 101245796 4328058 100273430 103858197 103866259 100249945 7496980 7497210 11440396 11428961 123131709 123135553 123401356 121219114 107923790 111202348 106438266 8066511 102602770 127901208 102610032 100833895 107788810 107762744
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