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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   PIL1   phytochrome interacting factor 3-like 1 
 ath-r.7   PIL1   phytochrome interacting factor 3-like 1 
 ath-e.2   PIL1   phytochrome interacting factor 3-like 1 

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Top 50 coexpressed genes to PIL1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PIL1 (ath-u.5 coexpression data)

CoexMap"819311"


athPIL1 | Entrez gene ID : 819311      
Species ath tae mtr osa zma bdi vvi sbi ppo bna sly nta cre sot hvu ghi gma cit bra
Paralog 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04075 [list] [network] Plant hormone signal transduction (433 genes)
GO BP
GO:0009641 [list] [network] shade avoidance  (17 genes)  IEP  
GO:1990110 [list] [network] callus formation  (29 genes)  IMP  
GO:0010017 [list] [network] red or far-red light signaling pathway  (53 genes)  IEP IMP  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  IEA TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0046983 [list] [network] protein dimerization activity  (446 genes)  IEA  
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  IEA ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001323543.1 [sequence] [blastp]
NP_001323544.1 [sequence] [blastp]
NP_182220.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001323543.1)
nucl 10  (predict for NP_001323544.1)
nucl 10  (predict for NP_182220.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001323543.1)
other 8,  mito 3  (predict for NP_001323544.1)
other 7,  chlo 6  (predict for NP_182220.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
PIL1

.
ath-r.7
for
PIL1

.
ath-e.2
for
PIL1

.


Ortholog ID: 19261
Species ath bra bna bna
Symbol PIL1 LOC103858230 LOC106394464 LOC106454412
Function* phytochrome interacting factor 3-like 1 transcription factor PIL1 transcription factor PIL1-like transcription factor PIL1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 7
bna00380 Tryptophan metabolism 4
bna00960 Tropane, piperidine and pyridine alkaloid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04075 Plant hormone signal transduction 6
bna00380 Tryptophan metabolism 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819311 103858230 106394464 106454412
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