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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT2G47090   zinc ion binding/nucleic acid binding protein 
 ath-r.7   AT2G47090   zinc ion binding/nucleic acid binding protein 
 ath-e.2   AT2G47090   zinc ion binding/nucleic acid binding protein 
 ath-u.5   AT3G62240   RING/U-box superfamily protein 
 gma-u.5   100799878   E3 ubiquitin-protein ligase ZNF598 
 gma-u.5   100780426   E3 ubiquitin-protein ligase ZNF598 
 vvi-u.5   100262296   uncharacterized LOC100262296 
 ppo-u.5   7465219   E3 ubiquitin-protein ligase HEL2 
 ppo-u.5   7481432   uncharacterized LOC7481432 
 ppo-u.5   7455399   uncharacterized LOC7455399 
 mtr-u.5   11430027   uncharacterized LOC11430027 
 sly-u.5   101255131   uncharacterized LOC101255131 
 osa-u.5   4327105   E3 ubiquitin-protein ligase hel2 
 osa-u.5   4338285   E3 ubiquitin-protein ligase hel2 
 zma-u.5   103639484   E3 ubiquitin-protein ligase hel2 
 zma-u.5   100383253   uncharacterized LOC100383253 
 zma-u.5   100383358   putative RING zinc finger domain superfamily protein 

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Top 50 coexpressed genes to AT2G47090 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G47090 (ath-u.5 coexpression data)

CoexMap"819322"


athAT2G47090 | Entrez gene ID : 819322      
Species ath gma vvi ppo mtr sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 4 2 1 3 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009413 [list] [network] response to flooding  (7 genes)  IMP  
GO:0016567 [list] [network] protein ubiquitination  (170 genes)  IDA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (83 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189767.1 [sequence] [blastp]
NP_001324629.1 [sequence] [blastp]
NP_001324630.1 [sequence] [blastp]
NP_001324631.1 [sequence] [blastp]
NP_566094.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001189767.1)
nucl 10  (predict for NP_001324629.1)
nucl 10  (predict for NP_001324630.1)
nucl 10  (predict for NP_001324631.1)
nucl 10  (predict for NP_566094.2)
Subcellular
localization
TargetP
other 7  (predict for NP_001189767.1)
other 7  (predict for NP_001324629.1)
other 7  (predict for NP_001324630.1)
other 7  (predict for NP_001324631.1)
other 7  (predict for NP_566094.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT2G47090

.
ath-r.7
for
AT2G47090

.
ath-e.2
for
AT2G47090

.
ath-u.5
for
AT3G62240

.
gma-u.5
for
100799878

.
gma-u.5
for
100780426

.
vvi-u.5
for
100262296

.
ppo-u.5
for
7465219

.
ppo-u.5
for
7481432

.
ppo-u.5
for
7455399

.
mtr-u.5
for
11430027

.
sly-u.5
for
101255131

.
osa-u.5
for
4327105

.
osa-u.5
for
4338285

.
zma-u.5
for
103639484

.
zma-u.5
for
100383253

.
zma-u.5
for
100383358

.


Ortholog ID: 3676
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol AT3G62240 AT2G47090 LOC100799878 LOC100780426 LOC101255131 LOC4338285 LOC4327105 LOC100383253 LOC100383358 LOC103866405 LOC103830350 LOC100262296 LOC7465219 LOC7481432 LOC11430027 LOC123112986 LOC123122502 LOC123428512 LOC107922705 LOC106436384 LOC106391905 CHLRE_12g528400v5 LOC8081900 LOC102586461 LOC102621840 LOC100834912 LOC100832124 LOC107762200 LOC107789211
Function* RING/U-box superfamily protein zinc ion binding/nucleic acid binding protein E3 ubiquitin-protein ligase ZNF598 E3 ubiquitin-protein ligase ZNF598 uncharacterized LOC101255131 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase hel2 uncharacterized LOC100383253 putative RING zinc finger domain superfamily protein E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase ZNF598 uncharacterized LOC100262296 E3 ubiquitin-protein ligase HEL2 uncharacterized LOC7481432 uncharacterized LOC11430027 uncharacterized LOC123112986 E3 ubiquitin-protein ligase ZNF598 E3 ubiquitin-protein ligase ZNF598-like E3 ubiquitin-protein ligase ZNF598 E3 ubiquitin-protein ligase hel2-like E3 ubiquitin-protein ligase hel2 uncharacterized protein E3 ubiquitin-protein ligase ZNF598 zinc finger protein 598-like E3 ubiquitin-protein ligase HEL2 E3 ubiquitin-protein ligase hel2 E3 ubiquitin-protein ligase hel2 uncharacterized LOC107762200 uncharacterized LOC107789211
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 2
bra00410 beta-Alanine metabolism 2
bra00640 Propanoate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 4
ghi03015 mRNA surveillance pathway 4
ghi03008 Ribosome biogenesis in eukaryotes 2
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 8
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 2
bna03420 Nucleotide excision repair 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 3
cre03040 Spliceosome 2
cre00260 Glycine, serine and threonine metabolism 2
cre01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot03015 mRNA surveillance pathway 2
sot03022 Basal transcription factors 2
sot03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 825397 819322 100799878 100780426 101255131 4338285 4327105 100383253 100383358 103866405 103830350 100262296 7465219 7481432 11430027 123112986 123122502 123428512 107922705 106436384 106391905 5722445 8081900 102586461 102621840 100834912 100832124 107762200 107789211
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