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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-r.7   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.9   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-e.2   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.bio   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.hor   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.lig   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.str   SWI3A   SWITCH/sucrose nonfermenting 3A 
 ath-m.4.tis   SWI3A   SWITCH/sucrose nonfermenting 3A 
 gma-u.5   100790238   SWI/SNF complex subunit SWI3A 
 gma-u.5   100800135   SWI/SNF complex subunit SWI3A 
 vvi-u.5   100250960   SWI/SNF complex subunit SWI3A 
 ppo-u.5   7456341   SWI/SNF complex subunit SWI3A 
 mtr-u.5   11435068   SWI/SNF complex subunit SWI3A 
 sly-u.5   SWI3A   SWI/SNF complex subunit SWI3A 
 zma-u.5   100285161   uncharacterized LOC100285161 

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Top 50 coexpressed genes to SWI3A (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to SWI3A (ath-u.5 coexpression data)

CoexMap"819375"


athSWI3A | Entrez gene ID : 819375      
Species ath gma vvi ppo mtr sly zma sbi nta bra osa cre cit hvu bdi sot tae bna ghi
Paralog 9 2 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:0006338 [list] [network] chromatin remodeling  (210 genes)  ISS  
GO CC
GO:0016514 [list] [network] SWI/SNF complex  (8 genes)  ISS  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001324817.1 [sequence] [blastp]
NP_850476.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  cysk 2,  nucl_plas 2  (predict for NP_001324817.1)
cyto 4,  nucl 4,  cysk 1  (predict for NP_850476.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001324817.1)
other 8  (predict for NP_850476.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
SWI3A

.
ath-r.7
for
SWI3A

.
ath-m.9
for
SWI3A

.
ath-e.2
for
SWI3A

.
ath-m.4.bio
for
SWI3A

.
ath-m.4.hor
for
SWI3A

.
ath-m.4.lig
for
SWI3A

.
ath-m.4.str
for
SWI3A

.
ath-m.4.tis
for
SWI3A

.
gma-u.5
for
100790238

.
gma-u.5
for
100800135

.
vvi-u.5
for
100250960

.
ppo-u.5
for
7456341

.
mtr-u.5
for
11435068

.
sly-u.5
for
SWI3A

.
zma-u.5
for
100285161

.


Ortholog ID: 8921
Species ath gma gma sly zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit nta nta
Symbol SWI3A LOC100800135 LOC100790238 SWI3A LOC100285161 LOC103858250 LOC103866358 LOC100250960 LOC7456341 LOC11435068 LOC123189540 LOC123053649 LOC123427013 LOC107939099 LOC107913439 LOC106396297 LOC106438333 LOC8058721 LOC102596754 LOC102578885 LOC102625519 LOC107815401 LOC107824877
Function* SWITCH/sucrose nonfermenting 3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A uncharacterized LOC100285161 SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A homolog SWI/SNF complex subunit SWI3A homolog SWI/SNF complex subunit SWI3A homolog SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A-like SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A-like SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A SWI/SNF complex subunit SWI3A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 3
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03082 ATP-dependent chromatin remodeling 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03015 mRNA surveillance pathway 4
tae03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 6
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
hvu04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03420 Nucleotide excision repair 2
ghi03460 Fanconi anemia pathway 2
ghi03020 RNA polymerase 2
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna04130 SNARE interactions in vesicular transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04130 SNARE interactions in vesicular transport 4
bna03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03420 Nucleotide excision repair 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 8
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819375 100800135 100790238 101250780 100285161 103858250 103866358 100250960 7456341 11435068 123189540 123053649 123427013 107939099 107913439 106396297 106438333 8058721 102596754 102578885 102625519 107815401 107824877
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