ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	AT2G47970	Nuclear pore localization protein NPL4
ath-r.7	AT2G47970	Nuclear pore localization protein NPL4
ath-m.9	AT2G47970	Nuclear pore localization protein NPL4
ath-e.2	AT2G47970	Nuclear pore localization protein NPL4
ath-m.4.bio	AT2G47970	Nuclear pore localization protein NPL4
ath-m.4.hor	AT2G47970	Nuclear pore localization protein NPL4
ath-m.4.lig	AT2G47970	Nuclear pore localization protein NPL4
ath-m.4.str	AT2G47970	Nuclear pore localization protein NPL4
ath-m.4.tis	AT2G47970	Nuclear pore localization protein NPL4
ath-u.5	NPL41	NPL4-like protein 1
gma-u.5	100811623	NPL4-like protein 1
gma-u.5	100779549	NPL4-like protein 1
vvi-u.5	100242502	NPL4-like protein 2
ppo-u.5	7481454	NPL4-like protein 1
ppo-u.5	7466262	NPL4-like protein 1
mtr-u.5	25499572	NPL4-like protein 1
sly-u.5	101248688	NPL4-like protein 2
osa-u.5	4325451	NPL4-like protein
zma-u.5	100273080	uncharacterized LOC100273080
zma-u.5	100194136	NPL4 family

Annotation

functional annotation

KEGG

ath04141 [list] [network] Protein processing in endoplasmic reticulum (220 genes)

GO BP

GO CC

GO:0005829 [list] [network] cytosol

(2593 genes)

HDA

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_566118.1 [sequence] [blastp]
NP_973714.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 5, mito 4, chlo 1, plas 1	(predict for NP_566118.1)
mito 4, cyto 3, chlo_mito 3, mito_plas 3	(predict for NP_973714.1)

Subcellular
localization
TargetP

mito 5, other 5	(predict for NP_566118.1)
mito 5, other 5	(predict for NP_973714.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G47970	ath-r.7 for AT2G47970	ath-m.9 for AT2G47970	ath-e.2 for AT2G47970	ath-m.4.bio for AT2G47970	ath-m.4.hor for AT2G47970	ath-m.4.lig for AT2G47970	ath-m.4.str for AT2G47970	ath-m.4.tis for AT2G47970	ath-u.5 for NPL41	gma-u.5 for 100811623	gma-u.5 for 100779549	vvi-u.5 for 100242502	ppo-u.5 for 7481454	ppo-u.5 for 7466262	mtr-u.5 for 25499572	sly-u.5 for 101248688	osa-u.5 for 4325451	zma-u.5 for 100273080	zma-u.5 for 100194136

Ortholog

Ortholog ID: 7975

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

NPL41

Function^*

NPL4-like protein 1

Nuclear pore localization protein NPL4

NPL4-like protein 1

NPL4-like protein 2

NPL4-like protein 1

NPL4-like protein 2

NPL4-like protein 1

NPL4-like protein

NPL4 family

uncharacterized LOC100273080

NPL4-like protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03050	Proteasome	5
bra04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	8
bna00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04141	Protein processing in endoplasmic reticulum	7
bna00513	Various types of N-glycan biosynthesis	2
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04141	Protein processing in endoplasmic reticulum	4
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03050	Proteasome	4
gma03040	Spliceosome	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	4
gma03050	Proteasome	3
gma00020	Citrate cycle (TCA cycle)	2
gma01200	Carbon metabolism	2
gma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	5
vvi01200	Carbon metabolism	3
vvi00520	Amino sugar and nucleotide sugar metabolism	2
vvi01250	Biosynthesis of nucleotide sugars	2
vvi00785	Lipoic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00450	Selenocompound metabolism	2
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	5
mtr03050	Proteasome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03050	Proteasome	4
sly04120	Ubiquitin mediated proteolysis	3
sly04141	Protein processing in endoplasmic reticulum	3
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03250	Viral life cycle - HIV-1	2
sot03272	Virion - Hepatitis viruses	2
sot04144	Endocytosis	2
sot04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	7
nta00100	Steroid biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03050	Proteasome	7
nta00100	Steroid biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	3
zma00020	Citrate cycle (TCA cycle)	2
zma00785	Lipoic acid metabolism	2
zma01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	5
zma04120	Ubiquitin mediated proteolysis	3
zma03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	13
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03050	Proteasome	8
tae04141	Protein processing in endoplasmic reticulum	3
tae02010	ABC transporters	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	6
hvu04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04144	Endocytosis	2
sbi03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03050	Proteasome	3
bdi04141	Protein processing in endoplasmic reticulum	2

Expression

Expression pattern

Entrez Gene ID^*

825475

819409

103862741

106444956

111212232

121220107

107930150

102620569

100779549

100811623

100242502

7466262

7481454

25499572

101248688

102604311

107768545

107791083

4325451

100194136

100273080

123136417

123132365

123402420

8060985

100843046

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT2G47970 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G47970 (ath-u.5 coexpression data)


Species	ath	gma	vvi	ppo	mtr	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	10	2	1	2	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT2G47970 (ath-u.5 coexpression data)

Top 50 enrichment test to AT2G47970 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**