ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	SWP	RNA polymerase II transcription mediator
ath-r.7	SWP	RNA polymerase II transcription mediator
ath-m.9	SWP	RNA polymerase II transcription mediator
ath-e.2	SWP	RNA polymerase II transcription mediator
ath-m.4.bio	SWP	RNA polymerase II transcription mediator
ath-m.4.hor	SWP	RNA polymerase II transcription mediator
ath-m.4.lig	SWP	RNA polymerase II transcription mediator
ath-m.4.str	SWP	RNA polymerase II transcription mediator
ath-m.4.tis	SWP	RNA polymerase II transcription mediator
bra-r.6	103849141	mediator of RNA polymerase II transcription subunit 14
bna-r.1	106453086	mediator of RNA polymerase II transcription subunit 14
bna-r.1	106427401	mediator of RNA polymerase II transcription subunit 14
ghi-r.1	107894950	mediator of RNA polymerase II transcription subunit 14-like
ghi-r.1	107899159	mediator of RNA polymerase II transcription subunit 14-like
cit-r.1	102616264	mediator of RNA polymerase II transcription subunit 14
gma-u.5	100797588	mediator of RNA polymerase II transcription subunit 14
gma-u.5	100783484	mediator of RNA polymerase II transcription subunit 14
vvi-u.5	100267561	mediator of RNA polymerase II transcription subunit 14
ppo-u.5	18098970	mediator of RNA polymerase II transcription subunit 14
ppo-u.5	7487671	mediator of RNA polymerase II transcription subunit 14-like
mtr-u.5	25499680	mediator of RNA polymerase II transcription subunit 14
mtr-u.5	11414438	mediator of RNA polymerase II transcription subunit 14-like
sly-u.5	101261458	mediator of RNA polymerase II transcription subunit 14
sot-r.1	102583398	mediator of RNA polymerase II transcription subunit 14
nta-r.1	107828476	mediator of RNA polymerase II transcription subunit 14-like
nta-r.1	107784304	mediator of RNA polymerase II transcription subunit 14
osa-u.5	4345299	mediator of RNA polymerase II transcription subunit 14
osa-u.5	4346616	mediator of RNA polymerase II transcription subunit 14
zma-u.5	100279374	Mediator of RNA polymerase II transcription subunit 14
tae-r.2	123121008	mediator of RNA polymerase II transcription subunit 14
tae-r.2	123052617	mediator of RNA polymerase II transcription subunit 14
tae-r.2	123103426	mediator of RNA polymerase II transcription subunit 14
hvu-r.1	123398659	mediator of RNA polymerase II transcription subunit 14-like
hvu-r.1	123426010	mediator of RNA polymerase II transcription subunit 14-like
sbi-r.1	8067996	mediator of RNA polymerase II transcription subunit 14
sbi-r.1	8063476	mediator of RNA polymerase II transcription subunit 14
bdi-r.1	100829137	mediator of RNA polymerase II transcription subunit 14
cre-r.1	CHLRE_03g190550v5	uncharacterized protein

Top 50 coexpressed genes to SWP (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to SWP (ath-u.5 coexpression data)

CoexMap"819634"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0140922 [list] [network] positive regulation of thermomorphogenesis	(3 genes)	IMP
GO:0045944 [list] [network] positive regulation of transcription by RNA polymerase II	(17 genes)	IDA
GO:0008284 [list] [network] positive regulation of cell population proliferation	(27 genes)	IMP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(55 genes)	IMP
GO:1905421 [list] [network] regulation of plant organ morphogenesis	(59 genes)	IMP
GO:0009631 [list] [network] cold acclimation	(60 genes)	IMP
GO:0009627 [list] [network] systemic acquired resistance	(68 genes)	IEP
GO:0009738 [list] [network] abscisic acid-activated signaling pathway	(111 genes)	IDA
GO:0045893 [list] [network] positive regulation of DNA-templated transcription	(262 genes)	ISS
GO:0009266 [list] [network] response to temperature stimulus	(682 genes)	IMP

GO CC

GO:0016592 [list] [network] mediator complex	(45 genes)	IDA ISS
GO:0009506 [list] [network] plasmodesma	(874 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0003712 [list] [network] transcription coregulator activity	(77 genes)	IDA
GO:0043565 [list] [network] sequence-specific DNA binding	(875 genes)	IDA
GO:0005515 [list] [network] protein binding	(5363 genes)	IPI

Protein

NP_187125.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, nucl 3, chlo 1, vacu 1, E.R. 1, cysk 1, E.R._vacu 1

(predict for NP_187125.1)

Subcellular
localization
TargetP

other 8

(predict for NP_187125.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for SWP	ath-r.7 for SWP	ath-m.9 for SWP	ath-e.2 for SWP	ath-m.4.bio for SWP	ath-m.4.hor for SWP	ath-m.4.lig for SWP	ath-m.4.str for SWP	ath-m.4.tis for SWP	bra-r.6 for 103849141	bna-r.1 for 106453086	bna-r.1 for 106427401	ghi-r.1 for 107894950	ghi-r.1 for 107899159	cit-r.1 for 102616264	gma-u.5 for 100797588	gma-u.5 for 100783484	vvi-u.5 for 100267561	ppo-u.5 for 18098970	ppo-u.5 for 7487671	mtr-u.5 for 25499680	mtr-u.5 for 11414438	sly-u.5 for 101261458	sot-r.1 for 102583398	nta-r.1 for 107828476	nta-r.1 for 107784304	osa-u.5 for 4345299	osa-u.5 for 4346616	zma-u.5 for 100279374	tae-r.2 for 123121008	tae-r.2 for 123052617	tae-r.2 for 123103426	hvu-r.1 for 123398659	hvu-r.1 for 123426010	sbi-r.1 for 8067996	sbi-r.1 for 8063476	bdi-r.1 for 100829137	cre-r.1 for CHLRE_03g190550v5

Ortholog

Ortholog ID: 6535

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SWP

Function^*

RNA polymerase II transcription mediator