ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-u.5	DAC	uncharacterized protein
ath-r.7	DAC	uncharacterized protein
ath-m.9	DAC	uncharacterized protein
ath-e.2	DAC	uncharacterized protein
ath-m.4.bio	DAC	uncharacterized protein
ath-m.4.hor	DAC	uncharacterized protein
ath-m.4.lig	DAC	uncharacterized protein
ath-m.4.str	DAC	uncharacterized protein
ath-m.4.tis	DAC	uncharacterized protein
bra-r.6	103869630	uncharacterized LOC103869630
bna-r.1	111215683	uncharacterized LOC111215683
bna-r.1	BNAA05G22300D	uncharacterized BNAA05G22300D
bna-r.1	BNAC05G35540D	uncharacterized BNAC05G35540D
ghi-r.1	121220778	uncharacterized LOC121220778
ghi-r.1	121203177	uncharacterized LOC121203177
ghi-r.1	107913649	uncharacterized LOC107913649
cit-r.1	102628487	hypothetical protein
gma-u.5	100790836	uncharacterized LOC100790836
gma-u.5	100306671	uncharacterized LOC100306671
vvi-u.5	100245848	uncharacterized LOC100245848
ppo-u.5	18105563	uncharacterized LOC18105563
mtr-u.5	11417030	uncharacterized LOC11417030
sly-u.5	101244581	uncharacterized LOC101244581
sot-r.1	102581786	uncharacterized LOC102581786
nta-r.1	107822957	uncharacterized LOC107822957
nta-r.1	107822436	uncharacterized LOC107822436
osa-u.5	4327543	uncharacterized LOC4327543
zma-u.5	100277981	uncharacterized LOC100277981
tae-r.2	123079474	uncharacterized LOC123079474
tae-r.2	123071104	uncharacterized LOC123071104
tae-r.2	123062337	uncharacterized LOC123062337
hvu-r.1	123444637	uncharacterized LOC123444637
sbi-r.1	8082407	uncharacterized LOC8082407
bdi-r.1	100844656	uncharacterized LOC100844656
cre-r.1	CHLRE_01g000850v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0010190 [list] [network] cytochrome b6f complex assembly

(8 genes)

IMP

GO CC

GO:0009535 [list] [network] chloroplast thylakoid membrane	(314 genes)	HDA
GO:0009507 [list] [network] chloroplast	(5014 genes)	ISM

GO MF

Protein

NP_566593.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 4, chlo 3, E.R._plas 3

(predict for NP_566593.1)

Subcellular
localization
TargetP

chlo 5

(predict for NP_566593.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for DAC	ath-r.7 for DAC	ath-m.9 for DAC	ath-e.2 for DAC	ath-m.4.bio for DAC	ath-m.4.hor for DAC	ath-m.4.lig for DAC	ath-m.4.str for DAC	ath-m.4.tis for DAC	bra-r.6 for 103869630	bna-r.1 for 111215683	bna-r.1 for BNAA05G22300D	bna-r.1 for BNAC05G35540D	ghi-r.1 for 121220778	ghi-r.1 for 121203177	ghi-r.1 for 107913649	cit-r.1 for 102628487	gma-u.5 for 100790836	gma-u.5 for 100306671	vvi-u.5 for 100245848	ppo-u.5 for 18105563	mtr-u.5 for 11417030	sly-u.5 for 101244581	sot-r.1 for 102581786	nta-r.1 for 107822957	nta-r.1 for 107822436	osa-u.5 for 4327543	zma-u.5 for 100277981	tae-r.2 for 123079474	tae-r.2 for 123071104	tae-r.2 for 123062337	hvu-r.1 for 123444637	sbi-r.1 for 8082407	bdi-r.1 for 100844656	cre-r.1 for CHLRE_01g000850v5

Ortholog

Ortholog ID: 8926

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

DAC

Function^*

uncharacterized protein

uncharacterized LOC103869630

uncharacterized LOC111215683

uncharacterized BNAA05G22300D

uncharacterized BNAC05G35540D

uncharacterized LOC121220778

uncharacterized LOC121203177

uncharacterized LOC107913649

hypothetical protein

uncharacterized LOC100790836

uncharacterized LOC100306671

uncharacterized LOC100245848

uncharacterized LOC18105563

uncharacterized LOC11417030

uncharacterized LOC101244581

uncharacterized LOC102581786

uncharacterized LOC107822957

uncharacterized LOC107822436

uncharacterized LOC4327543

uncharacterized LOC100277981

uncharacterized LOC123079474

uncharacterized LOC123071104

uncharacterized LOC123062337

uncharacterized LOC123444637

uncharacterized LOC8082407

uncharacterized LOC100844656

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00900	Terpenoid backbone biosynthesis	2
ath00902	Monoterpenoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	2
bna01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00460	Cyanoamino acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00710	Carbon fixation by Calvin cycle	5
bna01200	Carbon metabolism	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03060	Protein export	4
ghi04141	Protein processing in endoplasmic reticulum	4
ghi04145	Phagosome	4
ghi00860	Porphyrin metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3
cit00750	Vitamin B6 metabolism	2
cit01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	7
gma00710	Carbon fixation by Calvin cycle	2
gma01200	Carbon metabolism	2
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00195	Photosynthesis	5
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly01200	Carbon metabolism	7
sly00195	Photosynthesis	4
sly00710	Carbon fixation by Calvin cycle	4
sly00260	Glycine, serine and threonine metabolism	3
sly00630	Glyoxylate and dicarboxylate metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2
nta00195	Photosynthesis	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00073	Cutin, suberine and wax biosynthesis	2
nta00195	Photosynthesis	2
nta00053	Ascorbate and aldarate metabolism	2
nta00520	Amino sugar and nucleotide sugar metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	5
sbi00860	Porphyrin metabolism	2
sbi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	8

Expression

Expression pattern

Entrez Gene ID^*

819775

103869630

111215683

106390144

106422506

121220778

121203177

107913649

102628487

100790836

100306671

100245848

18105563

11417030

101244581

102581786

107822957

107822436

4327543

100277981

123079474

123071104

123062337

123444637

8082407

100844656

5725912

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to DAC (ath-u.5 coexpression data)

Top 50 enrichment test to DAC (ath-u.5 coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	3	1	2	1	1	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to DAC (ath-u.5 coexpression data)

Top 50 enrichment test to DAC (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**