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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-r.7   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.9   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-e.2   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.bio   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.hor   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.lig   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.str   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-m.4.tis   IBM1   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-u.5   B160   protein B160 
 ath-u.5   AT4G00990   Transcription factor jumonji (jmjC) domain-containing protein 
 ath-u.5   AT1G11950   Transcription factor jumonji (jmjC) domain-containing protein 
 gma-u.5   100787798   lysine-specific demethylase JMJ25 
 gma-u.5   100780803   putative JmjC domain-containing histone demethylase 
 gma-u.5   100806419   lysine-specific demethylase JMJ25 
 vvi-u.5   100258626   lysine-specific demethylase JMJ27 
 vvi-u.5   100250303   lysine-specific demethylase JMJ26 
 ppo-u.5   112323367   lysine-specific demethylase JMJ26 
 ppo-u.5   7494328   lysine-specific demethylase JMJ28 
 ppo-u.5   7477121   lysine-specific demethylase JMJ25 
 mtr-u.5   11443736   lysine-specific demethylase JMJ25 
 mtr-u.5   11440103   lysine-specific demethylase JMJ25 
 mtr-u.5   11433685   lysine-specific demethylase JMJ25 
 sly-u.5   101266484   lysine-specific demethylase JMJ28 
 sly-u.5   101260929   lysine-specific demethylase JMJ26-like 
 sly-u.5   101254269   lysine-specific demethylase JMJ26 
 osa-u.5   4328036   lysine-specific demethylase JMJ27 
 osa-u.5   4346966   lysine-specific demethylase JMJ26 
 zma-u.5   103643664   Transcription factor jumonji (jmjC) domain-containing protein 
 zma-u.5   115072891   zinc-finger domain transcription factor 
 zma-u.5   100280238   putative jumonji-like transcription factor family protein 

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Top 50 coexpressed genes to IBM1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to IBM1 (ath-u.5 coexpression data)

CoexMap"819952"


athIBM1 | Entrez gene ID : 819952      
Species ath gma vvi ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 12 3 2 3 3 3 2 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010440 [list] [network] stomatal lineage progression  (24 genes)  IMP  
GO:0080188 [list] [network] gene silencing by siRNA-directed DNA methylation  (44 genes)  IMP  
GO:0040029 [list] [network] epigenetic regulation of gene expression  (174 genes)  IMP  
GO:0048366 [list] [network] leaf development  (371 genes)  IMP  
GO:0009908 [list] [network] flower development  (378 genes)  IMP  
GO:0009555 [list] [network] pollen development  (385 genes)  IMP  
GO:0010468 [list] [network] regulation of gene expression  (2062 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0032454 [list] [network] histone H3K9 demethylase activity  (4 genes)  IDA IMP ISS  
GO:0031490 [list] [network] chromatin DNA binding  (22 genes)  IDA  
Protein NP_001078121.1 [sequence] [blastp]
NP_001189838.1 [sequence] [blastp]
NP_187418.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto_nucl 5,  cyto 2  (predict for NP_001078121.1)
nucl 7,  cyto 2  (predict for NP_001189838.1)
nucl 8,  cyto 1  (predict for NP_187418.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001078121.1)
other 8  (predict for NP_001189838.1)
other 8  (predict for NP_187418.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
IBM1
ath-r.7
for
IBM1
ath-m.9
for
IBM1
ath-e.2
for
IBM1
ath-m.4.bio
for
IBM1
ath-m.4.hor
for
IBM1
ath-m.4.lig
for
IBM1
ath-m.4.str
for
IBM1
ath-m.4.tis
for
IBM1
ath-u.5
for
B160
ath-u.5
for
AT4G00990
ath-u.5
for
AT1G11950
gma-u.5
for
100787798
gma-u.5
for
100780803
gma-u.5
for
100806419
vvi-u.5
for
100258626
vvi-u.5
for
100250303
ppo-u.5
for
112323367
ppo-u.5
for
7494328
ppo-u.5
for
7477121
mtr-u.5
for
11443736
mtr-u.5
for
11440103
mtr-u.5
for
11433685
sly-u.5
for
101266484
sly-u.5
for
101260929
sly-u.5
for
101254269
osa-u.5
for
4328036
osa-u.5
for
4346966
zma-u.5
for
103643664
zma-u.5
for
115072891
zma-u.5
for
100280238


Ortholog ID: 405
Species ath ath bra bra bna bna ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr sly sly sot nta nta osa zma zma tae hvu sbi bdi cre
Symbol AT4G00990 AT1G62310 LOC103836196 LOC103859003 LOC106384149 LOC106365732 LOC107920142 LOC107886373 LOC102618372 LOC102608274 LOC100799234 LOC112997634 LOC100247074 LOC100258626 LOC7496997 LOC112323367 LOC11444490 LOC11445522 LOC101265193 LOC101266484 LOC102602507 LOC107807497 LOC107760914 LOC4346966 LOC103643664 LOC103654986 LOC123135497 LOC123395900 LOC8064531 LOC100822574 CHLRE_10g446850v5
Function* Transcription factor jumonji (jmjC) domain-containing protein transcription factor jumonji (jmjC) domain-containing protein lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 uncharacterized LOC100247074 lysine-specific demethylase JMJ27 lysine-specific demethylase JMJ28 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ26 lysine-specific demethylase JMJ28 uncharacterized LOC102602507 lysine-specific demethylase JMJ29-like lysine-specific demethylase JMJ29 lysine-specific demethylase JMJ26 Transcription factor jumonji (jmjC) domain-containing protein putative jumonji-like transcription factor family protein lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25-like lysine-specific demethylase JMJ25 lysine-specific demethylase JMJ25 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 4
bra04148 Efferocytosis 4
bra04145 Phagosome 3
bra00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03083 Polycomb repressive complex 4
bna03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 2
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 3
ghi00061 Fatty acid biosynthesis 3
ghi01040 Biosynthesis of unsaturated fatty acids 3
ghi01212 Fatty acid metabolism 3
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 3
cit00620 Pyruvate metabolism 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00250 Alanine, aspartate and glutamate metabolism 3
mtr01230 Biosynthesis of amino acids 3
mtr00910 Nitrogen metabolism 3
mtr00195 Photosynthesis 2
mtr01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00010 Glycolysis / Gluconeogenesis 5
zma00270 Cysteine and methionine metabolism 2
zma00620 Pyruvate metabolism 2
zma00030 Pentose phosphate pathway 2
zma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 2
zma03082 ATP-dependent chromatin remodeling 2
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
sbi04814 Motor proteins 2
sbi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi00480 Glutathione metabolism 2
bdi01232 Nucleotide metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827933 842529 103836196 103859003 106384149 106365732 107920142 107886373 102618372 102608274 100799234 112997634 100247074 100258626 7496997 112323367 11444490 11445522 101265193 101266484 102602507 107807497 107760914 4346966 103643664 103654986 123135497 123395900 8064531 100822574 5723853
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