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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-r.7   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-m.9   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-e.2   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-m.4.bio   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-m.4.hor   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-m.4.lig   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-m.4.str   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-m.4.tis   AT3G01890   SWIB/MDM2 domain superfamily protein 
 ath-u.5   CHC1   SWIB/MDM2 domain superfamily protein 
 gma-u.5   100817271   SWI/SNF complex component SNF12 homolog 
 gma-u.5   100802455   SWI/SNF complex component SNF12 homolog 
 gma-u.5   100790947   SWI/SNF complex component SNF12 homolog 
 vvi-u.5   100261825   SWI/SNF complex component SNF12 homolog 
 vvi-u.5   100250968   SWI/SNF complex component SNF12 homolog 
 ppo-u.5   7454707   SWI/SNF complex component SNF12 homolog 
 ppo-u.5   7454548   SWI/SNF complex component SNF12 homolog 
 ppo-u.5   18107230   SWI/SNF complex component SNF12 homolog 
 mtr-u.5   25495726   SWI/SNF complex component SNF12 homolog 
 mtr-u.5   11405569   SWI/SNF complex component SNF12 homolog 
 sly-u.5   101248354   SWI/SNF complex component SNF12 homolog 
 sly-u.5   101264507   SWI/SNF complex component SNF12 homolog 
 osa-u.5   4335638   SWI/SNF complex component SNF12 homolog 
 zma-u.5   100382816   uncharacterized LOC100382816 
 zma-u.5   103638113   SWI/SNF complex component SNF12 homolog 
 zma-u.5   109940767   SWI/SNF complex component SNF12 homolog 

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Top 50 coexpressed genes to AT3G01890 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G01890 (ath-u.5 coexpression data)

CoexMap"820093"


athAT3G01890 | Entrez gene ID : 820093      
Species ath gma vvi ppo mtr sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 10 3 2 3 2 2 1 3 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03082 [list] [network] ATP-dependent chromatin remodeling (64 genes)
GO BP
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_566154.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for NP_566154.2)
Subcellular
localization
TargetP
chlo 4  (predict for NP_566154.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G01890

.
ath-r.7
for
AT3G01890

.
ath-m.9
for
AT3G01890

.
ath-e.2
for
AT3G01890

.
ath-m.4.bio
for
AT3G01890

.
ath-m.4.hor
for
AT3G01890

.
ath-m.4.lig
for
AT3G01890

.
ath-m.4.str
for
AT3G01890

.
ath-m.4.tis
for
AT3G01890

.
ath-u.5
for
CHC1

.
gma-u.5
for
100817271

.
gma-u.5
for
100802455

.
gma-u.5
for
100790947

.
vvi-u.5
for
100261825

.
vvi-u.5
for
100250968

.
ppo-u.5
for
7454707

.
ppo-u.5
for
7454548

.
ppo-u.5
for
18107230

.
mtr-u.5
for
25495726

.
mtr-u.5
for
11405569

.
sly-u.5
for
101248354

.
sly-u.5
for
101264507

.
osa-u.5
for
4335638

.
zma-u.5
for
100382816

.
zma-u.5
for
103638113

.
zma-u.5
for
109940767

.


Ortholog ID: 3096
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol CHC1 AT3G01890 LOC100784907 LOC100776562 LOC101248354 LOC101264507 LOC4335638 LOC109940767 LOC100382816 LOC103846505 LOC103856064 LOC100250968 LOC100261825 LOC7454548 LOC18107230 LOC11405569 LOC123189035 LOC123053127 LOC123426518 LOC107904814 LOC121208437 LOC111198021 LOC106372233 CHLRE_10g448700v5 LOC8072202 LOC102587176 LOC102602635 LOC102609965 LOC102630009 LOC100832204 LOC107816546 LOC107797351
Function* SWIB/MDM2 domain superfamily protein SWIB/MDM2 domain superfamily protein SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog uncharacterized LOC100382816 SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog uncharacterized protein SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog SWI/SNF complex component SNF12 homolog
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03082 ATP-dependent chromatin remodeling 3
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
gma00600 Sphingolipid metabolism 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 6
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03082 ATP-dependent chromatin remodeling 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00230 Purine metabolism 2
sly03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03040 Spliceosome 3
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 4
ppo03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
ppo04144 Endocytosis 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae04712 Circadian rhythm - plant 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 2
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03018 RNA degradation 2
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 5
bdi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 5
nta03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831267 820093 100784907 100776562 101248354 101264507 4335638 109940767 100382816 103846505 103856064 100250968 100261825 7454548 18107230 11405569 123189035 123053127 123426518 107904814 121208437 111198021 106372233 5723870 8072202 102587176 102602635 102609965 102630009 100832204 107816546 107797351
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