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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-r.7   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-m.9   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-e.2   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-m.4.bio   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-m.4.hor   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-m.4.lig   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-m.4.str   AT3G02820   zinc knuckle (CCHC-type) family protein 
 ath-m.4.tis   AT3G02820   zinc knuckle (CCHC-type) family protein 
 bra-r.6   103870890   TIMELESS-interacting protein 
 bna-r.1   106453211   TIMELESS-interacting protein 
 bna-r.1   125587556   TIMELESS-interacting protein-like 
 ghi-r.1   107909976   TIMELESS-interacting protein 
 ghi-r.1   107886349   TIMELESS-interacting protein 
 gma-u.5   100815444   uncharacterized LOC100815444 
 gma-u.5   100808422   TIMELESS-interacting protein 
 gma-u.5   100799216   Swi3 and Zn finger domain-containing protein 
 vvi-u.5   100240999   uncharacterized LOC100240999 
 ppo-u.5   7459070   uncharacterized LOC7459070 
 mtr-u.5   112421389   TIMELESS-interacting protein 
 sly-u.5   101252679   chromosome segregation in meiosis protein 3 
 sot-r.1   102588496   TIMELESS-interacting protein 
 nta-r.1   107821293   uncharacterized LOC107821293 
 nta-r.1   107780880   uncharacterized LOC107780880 
 osa-u.5   4330814   putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 
 zma-u.5   100192665   nucleic acid binding protein 
 tae-r.2   123093282   uncharacterized LOC123093282 
 tae-r.2   123098549   uncharacterized LOC123098549 
 hvu-r.1   123449537   uncharacterized LOC123449537 
 hvu-r.1   123397519   nascent polypeptide-associated complex subunit alpha, muscle-specific form-like 
 sbi-r.1   8069239   TIMELESS-interacting protein 
 bdi-r.1   100821358   uncharacterized LOC100821358 
 bdi-r.1   100834083   uncharacterized LOC100834083 
 cre-r.1   CHLRE_12g512500v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G02820 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G02820 (ath-u.5 coexpression data)

CoexMap"821018"


athAT3G02820 | Entrez gene ID : 821018      
Species ath bra bna ghi gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre cit
Paralog 9 1 2 2 3 1 1 1 1 1 2 1 1 2 2 1 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0031297 [list] [network] replication fork processing  (1 genes)  IEA  
GO:0000076 [list] [network] DNA replication checkpoint signaling  (3 genes)  IEA  
GO:0006974 [list] [network] DNA damage response  (246 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IEA ISM  
GO MF
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
Protein NP_001327085.1 [sequence] [blastp]
NP_186931.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001327085.1)
nucl 9,  chlo 1,  mito 1,  chlo_mito 1  (predict for NP_186931.2)
Subcellular
localization
TargetP
other 5  (predict for NP_001327085.1)
chlo 9  (predict for NP_186931.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G02820
ath-r.7
for
AT3G02820
ath-m.9
for
AT3G02820
ath-e.2
for
AT3G02820
ath-m.4.bio
for
AT3G02820
ath-m.4.hor
for
AT3G02820
ath-m.4.lig
for
AT3G02820
ath-m.4.str
for
AT3G02820
ath-m.4.tis
for
AT3G02820
bra-r.6
for
103870890
bna-r.1
for
106453211
bna-r.1
for
125587556
ghi-r.1
for
107909976
ghi-r.1
for
107886349
gma-u.5
for
100815444
gma-u.5
for
100808422
gma-u.5
for
100799216
vvi-u.5
for
100240999
ppo-u.5
for
7459070
mtr-u.5
for
112421389
sly-u.5
for
101252679
sot-r.1
for
102588496
nta-r.1
for
107821293
nta-r.1
for
107780880
osa-u.5
for
4330814
zma-u.5
for
100192665
tae-r.2
for
123093282
tae-r.2
for
123098549
hvu-r.1
for
123449537
hvu-r.1
for
123397519
sbi-r.1
for
8069239
bdi-r.1
for
100821358
bdi-r.1
for
100834083
cre-r.1
for
CHLRE_12g512500v5


Ortholog ID: 8463
Species ath bra bna bna ghi ghi gma gma gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu hvu sbi bdi bdi cre
Symbol AT3G02820 LOC103870890 LOC106453211 LOC125587556 LOC107909976 LOC107886349 LOC100815444 LOC100808422 LOC100799216 LOC100240999 LOC7459070 LOC112421389 LOC101252679 LOC102588496 LOC107821293 LOC107780880 LOC4330814 LOC100192665 LOC123093282 LOC123098549 LOC123449537 LOC123397519 LOC8069239 LOC100821358 LOC100834083 CHLRE_12g512500v5
Function* zinc knuckle (CCHC-type) family protein TIMELESS-interacting protein TIMELESS-interacting protein TIMELESS-interacting protein-like TIMELESS-interacting protein TIMELESS-interacting protein uncharacterized LOC100815444 TIMELESS-interacting protein Swi3 and Zn finger domain-containing protein uncharacterized LOC100240999 uncharacterized LOC7459070 TIMELESS-interacting protein chromosome segregation in meiosis protein 3 TIMELESS-interacting protein uncharacterized LOC107821293 uncharacterized LOC107780880 putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 nucleic acid binding protein uncharacterized LOC123093282 uncharacterized LOC123098549 uncharacterized LOC123449537 nascent polypeptide-associated complex subunit alpha, muscle-specific form-like TIMELESS-interacting protein uncharacterized LOC100821358 uncharacterized LOC100834083 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03430 Mismatch repair 2
ath03440 Homologous recombination 2
ath03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 5
bra03440 Homologous recombination 3
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
bra00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 8
bna03420 Nucleotide excision repair 6
bna03430 Mismatch repair 6
bna03410 Base excision repair 4
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 8
gma03420 Nucleotide excision repair 6
gma03430 Mismatch repair 6
gma03410 Base excision repair 5
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03030 DNA replication 7
vvi03410 Base excision repair 3
vvi03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03030 DNA replication 7
ppo03430 Mismatch repair 5
ppo03410 Base excision repair 4
ppo03420 Nucleotide excision repair 4
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 12
mtr03420 Nucleotide excision repair 3
mtr03430 Mismatch repair 2
mtr03440 Homologous recombination 2
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 9
sly03420 Nucleotide excision repair 3
sly03430 Mismatch repair 3
sly03440 Homologous recombination 2
sly03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 5
nta03420 Nucleotide excision repair 2
nta03430 Mismatch repair 2
nta03440 Homologous recombination 2
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03030 DNA replication 5
osa03440 Homologous recombination 2
osa00240 Pyrimidine metabolism 2
osa01232 Nucleotide metabolism 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
tae03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03030 DNA replication 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03030 DNA replication 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 8
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03030 DNA replication 9
bdi03440 Homologous recombination 4
bdi03460 Fanconi anemia pathway 3
bdi03420 Nucleotide excision repair 2
bdi03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03030 DNA replication 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821018 103870890 106453211 125587556 107909976 107886349 100815444 100808422 100799216 100240999 7459070 112421389 101252679 102588496 107821293 107780880 4330814 100192665 123093282 123098549 123449537 123397519 8069239 100821358 100834083 5716605
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