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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   LSF1   uncharacterized protein 
 ath-r.7   LSF1   uncharacterized protein 
 ath-m.9   LSF1   uncharacterized protein 
 ath-e.2   LSF1   uncharacterized protein 
 ath-m.4.bio   LSF1   uncharacterized protein 
 ath-m.4.hor   LSF1   uncharacterized protein 
 ath-m.4.lig   LSF1   uncharacterized protein 
 ath-m.4.str   LSF1   uncharacterized protein 
 ath-m.4.tis   LSF1   uncharacterized protein 
 bra-r.6   103858913   phosphoglucan phosphatase LSF1, chloroplastic 
 bna-r.1   106388667   phosphoglucan phosphatase LSF1, chloroplastic 
 bna-r.1   106438896   phosphoglucan phosphatase LSF1, chloroplastic 
 ghi-r.1   107942327   phosphoglucan phosphatase LSF1, chloroplastic 
 ghi-r.1   107926470   phosphoglucan phosphatase LSF1, chloroplastic 
 cit-r.1   102615969   phosphoglucan phosphatase LSF1, chloroplastic 
 gma-u.5   100814503   phosphoglucan phosphatase LSF1, chloroplastic 
 gma-u.5   100806392   phosphoglucan phosphatase LSF1, chloroplastic 
 vvi-u.5   100252584   phosphoglucan phosphatase LSF1, chloroplastic 
 ppo-u.5   18095314   phosphoglucan phosphatase LSF1, chloroplastic 
 mtr-u.5   25498007   phosphoglucan phosphatase LSF1, chloroplastic 
 sly-u.5   101243774   phosphoglucan phosphatase LSF1, chloroplastic 
 sot-r.1   102603794   phosphoglucan phosphatase LSF1, chloroplastic 
 nta-r.1   107801246   phosphoglucan phosphatase LSF1, chloroplastic 
 nta-r.1   107766450   phosphoglucan phosphatase LSF1, chloroplastic 
 osa-u.5   4345438   phosphoglucan phosphatase LSF1, chloroplastic 
 zma-u.5   103643331   phosphoglucan phosphatase LSF1, chloroplastic 
 tae-r.2   123183342   phosphoglucan phosphatase LSF1, chloroplastic 
 tae-r.2   123149230   phosphoglucan phosphatase LSF1, chloroplastic 
 tae-r.2   123070392   phosphoglucan phosphatase LSF1, chloroplastic 
 hvu-r.1   123452445   phosphoglucan phosphatase LSF1, chloroplastic 
 sbi-r.1   8070005   phosphoglucan phosphatase LSF1, chloroplastic 
 bdi-r.1   100836564   phosphoglucan phosphatase LSF1, chloroplastic 

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Top 50 coexpressed genes to LSF1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LSF1 (ath-u.5 coexpression data)

CoexMap"821127"


athLSF1 | Entrez gene ID : 821127      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0005983 [list] [network] starch catabolic process  (17 genes)  IMP  
GO:0006470 [list] [network] protein dephosphorylation  (41 genes)  IEA  
GO CC
GO:0009569 [list] [network] chloroplast starch grain  (6 genes)  IDA  
GO:0043036 [list] [network] starch grain  (8 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA IDA  
GO MF
GO:0019203 [list] [network] carbohydrate phosphatase activity  (26 genes)  IMP  
Protein NP_001325424.1 [sequence] [blastp]
NP_001325425.1 [sequence] [blastp]
NP_566139.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  cyto 3,  nucl 1,  cysk 1,  cysk_nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001325424.1)
chlo 3,  cyto 3,  nucl 1,  cysk 1,  cysk_nucl 1,  cyto_pero 1,  cyto_E.R. 1  (predict for NP_001325425.1)
chlo 6,  cyto 1,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  cyto_pero 1,  mito_plas 1,  cyto_E.R. 1  (predict for NP_566139.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001325424.1)
other 7  (predict for NP_001325425.1)
chlo 4  (predict for NP_566139.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
LSF1
ath-r.7
for
LSF1
ath-m.9
for
LSF1
ath-e.2
for
LSF1
ath-m.4.bio
for
LSF1
ath-m.4.hor
for
LSF1
ath-m.4.lig
for
LSF1
ath-m.4.str
for
LSF1
ath-m.4.tis
for
LSF1
bra-r.6
for
103858913
bna-r.1
for
106388667
bna-r.1
for
106438896
ghi-r.1
for
107942327
ghi-r.1
for
107926470
cit-r.1
for
102615969
gma-u.5
for
100814503
gma-u.5
for
100806392
vvi-u.5
for
100252584
ppo-u.5
for
18095314
mtr-u.5
for
25498007
sly-u.5
for
101243774
sot-r.1
for
102603794
nta-r.1
for
107801246
nta-r.1
for
107766450
osa-u.5
for
4345438
zma-u.5
for
103643331
tae-r.2
for
123183342
tae-r.2
for
123149230
tae-r.2
for
123070392
hvu-r.1
for
123452445
sbi-r.1
for
8070005
bdi-r.1
for
100836564


Ortholog ID: 10778
Species ath bra bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LSF1 LOC103858913 LOC106388667 LOC106438896 LOC107942327 LOC107926470 LOC102615969 LOC100814503 LOC100806392 LOC100252584 LOC18095314 LOC25498007 LOC101243774 LOC102603794 LOC107801246 LOC107766450 LOC4345438 LOC103643331 LOC123183342 LOC123149230 LOC123070392 LOC123452445 LOC8070005 LOC100836564
Function* uncharacterized protein phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic phosphoglucan phosphatase LSF1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00500 Starch and sucrose metabolism 4
ath00195 Photosynthesis 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 12
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
ghi00910 Nitrogen metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 12
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
ghi00910 Nitrogen metabolism 2
ghi00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 5
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 8
mtr00010 Glycolysis / Gluconeogenesis 2
mtr00230 Purine metabolism 2
mtr00520 Amino sugar and nucleotide sugar metabolism 2
mtr01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 7
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
nta00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 4
nta00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 2
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 4
tae03010 Ribosome 3
tae03060 Protein export 3
tae04145 Phagosome 3
tae00230 Purine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00500 Starch and sucrose metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821127 103858913 106388667 106438896 107942327 107926470 102615969 100814503 100806392 100252584 18095314 25498007 101243774 102603794 107801246 107766450 4345438 103643331 123183342 123149230 123070392 123452445 8070005 100836564
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