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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G01060   lysine-tRNA ligase 
 ath-r.7   AT3G01060   lysine-tRNA ligase 
 ath-m.9   AT3G01060   lysine-tRNA ligase 
 ath-e.2   AT3G01060   lysine-tRNA ligase 
 ath-m.4.bio   AT3G01060   lysine-tRNA ligase 
 ath-m.4.hor   AT3G01060   lysine-tRNA ligase 
 ath-m.4.lig   AT3G01060   lysine-tRNA ligase 
 ath-m.4.str   AT3G01060   lysine-tRNA ligase 
 ath-m.4.tis   AT3G01060   lysine-tRNA ligase 
 bra-r.6   103842846   uncharacterized LOC103842846 
 bna-r.1   BNACNNG29080D   uncharacterized BNACNNG29080D 
 bna-r.1   106404110   uncharacterized LOC106404110 
 bna-r.1   125580834   uncharacterized LOC125580834 
 ghi-r.1   107924117   uncharacterized LOC107924117 
 ghi-r.1   107911826   uncharacterized LOC107911826 
 cit-r.1   102619721   uncharacterized LOC102619721 
 gma-u.5   100811507   uncharacterized LOC100811507 
 gma-u.5   100818397   uncharacterized LOC100818397 
 vvi-u.5   100268024   uncharacterized LOC100268024 
 ppo-u.5   7484558   uncharacterized LOC7484558 
 mtr-u.5   11412994   uncharacterized LOC11412994 
 sly-u.5   101263285   uncharacterized LOC101263285 
 sot-r.1   102600694   uncharacterized LOC102600694 
 nta-r.1   107785218   uncharacterized LOC107785218 
 nta-r.1   107809781   uncharacterized LOC107809781 
 osa-u.5   4339294   uncharacterized LOC4339294 
 zma-u.5   100191662   uncharacterized LOC100191662 
 tae-r.2   123062671   uncharacterized LOC123062671 
 tae-r.2   123139866   uncharacterized LOC123139866 
 tae-r.2   123182609   uncharacterized LOC123182609 
 hvu-r.1   123416474   uncharacterized LOC123416474 
 sbi-r.1   8080105   uncharacterized LOC8080105 
 bdi-r.1   100838386   uncharacterized LOC100838386 
 cre-r.1   CHLRE_13g562750v5   uncharacterized protein 

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Top 50 coexpressed genes to AT3G01060 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G01060 (ath-u.5 coexpression data)

CoexMap"821278"


athAT3G01060 | Entrez gene ID : 821278      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0007623 [list] [network] circadian rhythm  (124 genes)  IEP  
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_566129.1 [sequence] [blastp]
NP_974200.2 [sequence] [blastp]
NP_974201.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for NP_566129.1)
chlo 9,  nucl 1  (predict for NP_974200.2)
chlo 8,  nucl 1  (predict for NP_974201.1)
Subcellular
localization
TargetP
chlo 6  (predict for NP_566129.1)
chlo 6  (predict for NP_974200.2)
chlo 6  (predict for NP_974201.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G01060
ath-r.7
for
AT3G01060
ath-m.9
for
AT3G01060
ath-e.2
for
AT3G01060
ath-m.4.bio
for
AT3G01060
ath-m.4.hor
for
AT3G01060
ath-m.4.lig
for
AT3G01060
ath-m.4.str
for
AT3G01060
ath-m.4.tis
for
AT3G01060
bra-r.6
for
103842846
bna-r.1
for
BNACNNG29080D
bna-r.1
for
106404110
bna-r.1
for
125580834
ghi-r.1
for
107924117
ghi-r.1
for
107911826
cit-r.1
for
102619721
gma-u.5
for
100811507
gma-u.5
for
100818397
vvi-u.5
for
100268024
ppo-u.5
for
7484558
mtr-u.5
for
11412994
sly-u.5
for
101263285
sot-r.1
for
102600694
nta-r.1
for
107785218
nta-r.1
for
107809781
osa-u.5
for
4339294
zma-u.5
for
100191662
tae-r.2
for
123062671
tae-r.2
for
123139866
tae-r.2
for
123182609
hvu-r.1
for
123416474
sbi-r.1
for
8080105
bdi-r.1
for
100838386
cre-r.1
for
CHLRE_13g562750v5


Ortholog ID: 9489
Species ath bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT3G01060 LOC103842846 BNACNNG29080D LOC106404110 LOC125580834 LOC107924117 LOC107911826 LOC102619721 LOC100811507 LOC100818397 LOC100268024 LOC7484558 LOC11412994 LOC101263285 LOC102600694 LOC107785218 LOC107809781 LOC4339294 LOC100191662 LOC123062671 LOC123139866 LOC123182609 LOC123416474 LOC8080105 LOC100838386 CHLRE_13g562750v5
Function* lysine-tRNA ligase uncharacterized LOC103842846 uncharacterized BNACNNG29080D uncharacterized LOC106404110 uncharacterized LOC125580834 uncharacterized LOC107924117 uncharacterized LOC107911826 uncharacterized LOC102619721 uncharacterized LOC100811507 uncharacterized LOC100818397 uncharacterized LOC100268024 uncharacterized LOC7484558 uncharacterized LOC11412994 uncharacterized LOC101263285 uncharacterized LOC102600694 uncharacterized LOC107785218 uncharacterized LOC107809781 uncharacterized LOC4339294 uncharacterized LOC100191662 uncharacterized LOC123062671 uncharacterized LOC123139866 uncharacterized LOC123182609 uncharacterized LOC123416474 uncharacterized LOC8080105 uncharacterized LOC100838386 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 8
sly00710 Carbon fixation by Calvin cycle 6
sly01230 Biosynthesis of amino acids 3
sly00260 Glycine, serine and threonine metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 4
nta00030 Pentose phosphate pathway 4
nta00051 Fructose and mannose metabolism 4
nta00710 Carbon fixation by Calvin cycle 4
nta01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00010 Glycolysis / Gluconeogenesis 4
nta00030 Pentose phosphate pathway 4
nta00051 Fructose and mannose metabolism 4
nta00710 Carbon fixation by Calvin cycle 4
nta01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
tae01200 Carbon metabolism 2
tae00230 Purine metabolism 2
tae00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00061 Fatty acid biosynthesis 3
tae01040 Biosynthesis of unsaturated fatty acids 3
tae01212 Fatty acid metabolism 3
tae00010 Glycolysis / Gluconeogenesis 2
tae00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 4
hvu00630 Glyoxylate and dicarboxylate metabolism 3
hvu04146 Peroxisome 2
hvu00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00906 Carotenoid biosynthesis 4
cre00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821278 103842846 106435621 106404110 125580834 107924117 107911826 102619721 100811507 100818397 100268024 7484558 11412994 101263285 102600694 107785218 107809781 4339294 100191662 123062671 123139866 123182609 123416474 8080105 100838386 5719021
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