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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-r.7   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.9   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-e.2   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.bio   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.hor   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.lig   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.str   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-m.4.tis   VRN1   AP2/B3-like transcriptional factor family protein 
 ath-u.5   AT3G18960   AP2/B3-like transcriptional factor family protein 
 ath-u.5   AT4G01580   AP2/B3-like transcriptional factor family protein 
 ath-u.5   AT1G49475   AP2/B3-like transcriptional factor family protein 
 gma-u.5   100819782   B3 domain-containing transcription factor VRN1 
 ppo-u.5   18097849   B3 domain-containing transcription factor VRN1 

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Top 50 coexpressed genes to VRN1 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VRN1 (ath-u.5 coexpression data)

CoexMap"821432"


athVRN1 | Entrez gene ID : 821432      
Species ath gma ppo tae mtr osa zma bdi vvi sbi bna sly nta cre sot hvu ghi cit bra
Paralog 12 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010048 [list] [network] vernalization response  (18 genes)  IMP  
GO:0009909 [list] [network] regulation of flower development  (163 genes)  IMP  
GO CC
GO:0005654 [list] [network] nucleoplasm  (262 genes)  IDA  
GO MF
GO:0000976 [list] [network] transcription cis-regulatory region binding  (716 genes)  IPI  
GO:0003677 [list] [network] DNA binding  (1274 genes)  IDA  
Protein NP_001326749.1 [sequence] [blastp]
NP_188529.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  mito 2,  nucl 2,  cyto_mito 1,  cyto 1,  plas 1,  extr 1,  cyto_plas 1  (predict for NP_001326749.1)
nucl 4,  chlo 3,  mito 1,  cyto_mito 1,  cyto 1,  extr 1  (predict for NP_188529.2)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001326749.1)
other 7,  mito 3  (predict for NP_188529.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
VRN1

.
ath-r.7
for
VRN1

.
ath-m.9
for
VRN1

.
ath-e.2
for
VRN1

.
ath-m.4.bio
for
VRN1

.
ath-m.4.hor
for
VRN1

.
ath-m.4.lig
for
VRN1

.
ath-m.4.str
for
VRN1

.
ath-m.4.tis
for
VRN1

.
ath-u.5
for
AT3G18960

.
ath-u.5
for
AT4G01580

.
ath-u.5
for
AT1G49475

.
gma-u.5
for
100819782

.
ppo-u.5
for
18097849

.


Ortholog ID: 406
Species ath ath gma sly bra bra vvi bna bna sot cit nta
Symbol AT1G49475 RTV1 LOC100806715 LOC101263629 LOC103869503 LOC103869505 LOC100265476 LOC106446858 LOC106446859 LOC102595417 LOC102626309 LOC107828317
Function* AP2/B3-like transcriptional factor family protein uncharacterized protein B3 domain-containing transcription factor VRN1 B3 domain-containing protein At4g01580-like B3 domain-containing transcription factor VRN1 B3 domain-containing protein At3g18960 cytochrome P450 82C4-like B3 domain-containing protein At3g18960 B3 domain-containing transcription factor VRN1 B3 domain-containing transcription factor VRN1-like B3 domain-containing transcription factor VRN1 B3 domain-containing protein At1g49475-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 3
ath04075 Plant hormone signal transduction 3
ath00640 Propanoate metabolism 2
ath01230 Biosynthesis of amino acids 2
ath01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04145 Phagosome 2
ath04148 Efferocytosis 2
ath04517 IgSF CAM signaling 2
ath04518 Integrin signaling 2
ath04620 Toll-like receptor signaling pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
gma03015 mRNA surveillance pathway 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01240 Biosynthesis of cofactors 4
bra00061 Fatty acid biosynthesis 4
bra01212 Fatty acid metabolism 4
bra00780 Biotin metabolism 3
bra00620 Pyruvate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 4
sot00010 Glycolysis / Gluconeogenesis 2
sot00051 Fructose and mannose metabolism 2
sot00562 Inositol phosphate metabolism 2
sot00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta03008 Ribosome biogenesis in eukaryotes 2
nta03013 Nucleocytoplasmic transport 2
nta03250 Viral life cycle - HIV-1 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841371 841372 100806715 101263629 103869503 103869505 100265476 106446858 106446859 102595417 102626309 107828317
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