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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-r.7   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.9   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-e.2   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.bio   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.hor   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.lig   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.str   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-m.4.tis   AT3G20280   RING/FYVE/PHD zinc finger superfamily protein 
 ath-u.5   AT1G50620   RING/FYVE/PHD zinc finger superfamily protein 
 gma-u.5   100807139   uncharacterized LOC100807139 
 gma-u.5   100783208   uncharacterized LOC100783208 
 vvi-u.5   104877603   uncharacterized LOC104877603 
 ppo-u.5   7487518   uncharacterized LOC7487518 
 mtr-u.5   11423387   uncharacterized LOC11423387 
 sly-u.5   101263491   uncharacterized LOC101263491 
 sly-u.5   101263625   uncharacterized LOC101263625 
 osa-u.5   4340852   uncharacterized LOC4340852 
 osa-u.5   4330546   PHD finger protein At3g20280 
 zma-u.5   103627658   PHD finger protein At3g20280 
 zma-u.5   100285969   uncharacterized LOC100285969 

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Top 50 coexpressed genes to AT3G20280 (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G20280 (ath-u.5 coexpression data)

CoexMap"821572"


athAT3G20280 | Entrez gene ID : 821572      
Species ath gma vvi ppo mtr sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 10 2 1 1 1 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001326649.1 [sequence] [blastp]
NP_001326650.1 [sequence] [blastp]
NP_001326651.1 [sequence] [blastp]
NP_566656.3 [sequence] [blastp]
NP_851007.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_001326649.1)
nucl 10  (predict for NP_001326650.1)
nucl 10  (predict for NP_001326651.1)
nucl 6,  chlo 2,  cyto 1,  pero 1,  cyto_pero 1  (predict for NP_566656.3)
nucl 10  (predict for NP_851007.1)
Subcellular
localization
TargetP
other 7,  chlo 5  (predict for NP_001326649.1)
other 7,  chlo 5  (predict for NP_001326650.1)
other 7,  chlo 5  (predict for NP_001326651.1)
other 7  (predict for NP_566656.3)
other 7,  chlo 5  (predict for NP_851007.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
AT3G20280

.
ath-r.7
for
AT3G20280

.
ath-m.9
for
AT3G20280

.
ath-e.2
for
AT3G20280

.
ath-m.4.bio
for
AT3G20280

.
ath-m.4.hor
for
AT3G20280

.
ath-m.4.lig
for
AT3G20280

.
ath-m.4.str
for
AT3G20280

.
ath-m.4.tis
for
AT3G20280

.
ath-u.5
for
AT1G50620

.
gma-u.5
for
100807139

.
gma-u.5
for
100783208

.
vvi-u.5
for
104877603

.
ppo-u.5
for
7487518

.
mtr-u.5
for
11423387

.
sly-u.5
for
101263491

.
sly-u.5
for
101263625

.
osa-u.5
for
4340852

.
osa-u.5
for
4330546

.
zma-u.5
for
103627658

.
zma-u.5
for
100285969

.


Ortholog ID: 5116
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sbi sot sot cit bdi nta nta
Symbol AT1G50620 AT3G20280 LOC100783208 LOC100807139 LOC101263625 LOC101263491 LOC4330546 LOC4340852 LOC100285969 LOC103627658 LOC103869339 LOC103868613 LOC104877603 LOC7487518 LOC11423387 LOC123145313 LOC123128208 LOC123405629 LOC107920675 LOC107926332 LOC106357507 LOC106415979 LOC110434913 LOC8072851 LOC102598370 LOC102590974 LOC102609182 LOC100842652 LOC107832656 LOC107793234
Function* RING/FYVE/PHD zinc finger superfamily protein RING/FYVE/PHD zinc finger superfamily protein uncharacterized LOC100783208 uncharacterized LOC100807139 uncharacterized LOC101263625 uncharacterized LOC101263491 PHD finger protein At3g20280 uncharacterized LOC4340852 uncharacterized LOC100285969 PHD finger protein At3g20280 PHD finger protein At3g20280 uncharacterized LOC103868613 uncharacterized LOC104877603 uncharacterized LOC7487518 uncharacterized LOC11423387 PHD finger protein At3g20280 PHD finger protein At3g20280 endochitinase A-like uncharacterized LOC107920675 uncharacterized LOC107926332 PHD finger protein At3g20280 uncharacterized LOC106415979 PHD finger protein At3g20280-like uncharacterized LOC8072851 uncharacterized LOC102598370 uncharacterized LOC102590974 uncharacterized LOC102609182 PHD finger protein At3g20280 uncharacterized LOC107832656 uncharacterized LOC107793234
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04814 Motor proteins 2
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03250 Viral life cycle - HIV-1 3
sly03015 mRNA surveillance pathway 3
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 3
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03082 ATP-dependent chromatin remodeling 2
sbi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841484 821572 100783208 100807139 101263625 101263491 4330546 4340852 100285969 103627658 103869339 103868613 104877603 7487518 11423387 123145313 123128208 123405629 107920675 107926332 106357507 106415979 110434913 8072851 102598370 102590974 102609182 100842652 107832656 107793234
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