ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT3G20800	Cell differentiation, Rcd1-like protein
ath-r.7	AT3G20800	Cell differentiation, Rcd1-like protein
ath-m.9	AT3G20800	Cell differentiation, Rcd1-like protein
ath-e.2	AT3G20800	Cell differentiation, Rcd1-like protein
ath-m.4.bio	AT3G20800	Cell differentiation, Rcd1-like protein
ath-m.4.hor	AT3G20800	Cell differentiation, Rcd1-like protein
ath-m.4.lig	AT3G20800	Cell differentiation, Rcd1-like protein
ath-m.4.str	AT3G20800	Cell differentiation, Rcd1-like protein
ath-m.4.tis	AT3G20800	Cell differentiation, Rcd1-like protein
ath-u.5	AT5G12980	Cell differentiation, Rcd1-like protein
bra-r.6	103835726	CCR4-NOT transcription complex subunit 9
bra-r.6	103855988	CCR4-NOT transcription complex subunit 9
bra-r.6	103869276	CCR4-NOT transcription complex subunit 9
bna-r.1	106454713	CCR4-NOT transcription complex subunit 9
bna-r.1	106435563	CCR4-NOT transcription complex subunit 9
bna-r.1	106431906	CCR4-NOT transcription complex subunit 9-like
ghi-r.1	121225310	CCR4-NOT transcription complex subunit 9
ghi-r.1	107889925	CCR4-NOT transcription complex subunit 9
ghi-r.1	107945315	CCR4-NOT transcription complex subunit 9
cit-r.1	102618037	uncharacterized LOC102618037
gma-u.5	100801266	CCR4-NOT transcription complex subunit 9
gma-u.5	100784529	CCR4-NOT transcription complex subunit 9
gma-u.5	100792784	CCR4-NOT transcription complex subunit 9
vvi-u.5	100265941	uncharacterized LOC100265941
ppo-u.5	7470819	uncharacterized LOC7470819
ppo-u.5	7483613	uncharacterized LOC7483613
mtr-u.5	25488987	CCR4-NOT transcription complex subunit 9
sly-u.5	101265516	uncharacterized LOC101265516
sly-u.5	101263473	uncharacterized LOC101263473
sly-u.5	101260874	uncharacterized LOC101260874
sot-r.1	102596009	cell differentiation protein RCD1 homolog
sot-r.1	102595126	cell differentiation protein RCD1 homolog
sot-r.1	102586245	cell differentiation protein RCD1 homolog
nta-r.1	107787317	uncharacterized LOC107787317
nta-r.1	107769964	uncharacterized LOC107769964
nta-r.1	107783900	uncharacterized LOC107783900
osa-u.5	9272009	uncharacterized LOC9272009
zma-u.5	100193338	uncharacterized LOC100193338
tae-r.2	123054307	CCR4-NOT transcription complex subunit 9
tae-r.2	123046458	CCR4-NOT transcription complex subunit 9
tae-r.2	123105303	CCR4-NOT transcription complex subunit 9
hvu-r.1	123452562	CCR4-NOT transcription complex subunit 9-like
hvu-r.1	123431497	CCR4-NOT transcription complex subunit 9-like
hvu-r.1	123427622	CCR4-NOT transcription complex subunit 9-like
sbi-r.1	8072335	CCR4-NOT transcription complex subunit 9
bdi-r.1	100837139	cell differentiation protein rcd1
bdi-r.1	100841771	CCR4-NOT transcription complex subunit 9
cre-r.1	CHLRE_12g540350v5	uncharacterized protein
cre-r.1	CHLRE_12g540400v5	uncharacterized protein

Top 50 coexpressed genes to AT3G20800 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G20800 (ath-u.5 coexpression data)

CoexMap"821628"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03018 [list] [network] RNA degradation (114 genes)

GO BP

GO:0006402 [list] [network] mRNA catabolic process

(40 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0005515 [list] [network] protein binding

(5363 genes)

IPI

Protein

NP_188716.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, cyto 3, extr 2, cyto_nucl 2

(predict for NP_188716.1)

Subcellular
localization
TargetP

chlo 5, other 4

(predict for NP_188716.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT3G20800	ath-r.7 for AT3G20800	ath-m.9 for AT3G20800	ath-e.2 for AT3G20800	ath-m.4.bio for AT3G20800	ath-m.4.hor for AT3G20800	ath-m.4.lig for AT3G20800	ath-m.4.str for AT3G20800	ath-m.4.tis for AT3G20800	ath-u.5 for AT5G12980	bra-r.6 for 103835726	bra-r.6 for 103855988	bra-r.6 for 103869276	bna-r.1 for 106454713	bna-r.1 for 106435563	bna-r.1 for 106431906	ghi-r.1 for 121225310	ghi-r.1 for 107889925	ghi-r.1 for 107945315	cit-r.1 for 102618037	gma-u.5 for 100801266	gma-u.5 for 100784529	gma-u.5 for 100792784	vvi-u.5 for 100265941	ppo-u.5 for 7470819	ppo-u.5 for 7483613	mtr-u.5 for 25488987	sly-u.5 for 101265516	sly-u.5 for 101263473	sly-u.5 for 101260874	sot-r.1 for 102596009	sot-r.1 for 102595126	sot-r.1 for 102586245	nta-r.1 for 107787317	nta-r.1 for 107769964	nta-r.1 for 107783900	osa-u.5 for 9272009	zma-u.5 for 100193338	tae-r.2 for 123054307	tae-r.2 for 123046458	tae-r.2 for 123105303	hvu-r.1 for 123452562	hvu-r.1 for 123431497	hvu-r.1 for 123427622	sbi-r.1 for 8072335	bdi-r.1 for 100837139	bdi-r.1 for 100841771	cre-r.1 for CHLRE_12g540350v5	cre-r.1 for CHLRE_12g540400v5

Ortholog

Ortholog ID: 3107

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Cell differentiation, Rcd1-like protein

CCR4-NOT transcription complex subunit 9

CCR4-NOT transcription complex subunit 9-like

CCR4-NOT transcription complex subunit 9

uncharacterized LOC102618037

CCR4-NOT transcription complex subunit 9

uncharacterized LOC100265941

uncharacterized LOC7470819

uncharacterized LOC7483613

CCR4-NOT transcription complex subunit 9

uncharacterized LOC101265516

uncharacterized LOC101263473

uncharacterized LOC101260874

cell differentiation protein RCD1 homolog

uncharacterized LOC107787317

uncharacterized LOC107769964

uncharacterized LOC107807908

uncharacterized LOC9272009

uncharacterized LOC100193338

CCR4-NOT transcription complex subunit 9

CCR4-NOT transcription complex subunit 9-like

CCR4-NOT transcription complex subunit 9

cell differentiation protein rcd1

CCR4-NOT transcription complex subunit 9

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04141	Protein processing in endoplasmic reticulum	3
ath03050	Proteasome	3
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00860	Porphyrin metabolism	4
ath00053	Ascorbate and aldarate metabolism	2
ath00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04142	Lysosome	2
bra04626	Plant-pathogen interaction	2
bra00190	Oxidative phosphorylation	2
bra04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00941	Flavonoid biosynthesis	8
bra04712	Circadian rhythm - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03018	RNA degradation	5
bna00010	Glycolysis / Gluconeogenesis	4
bna00562	Inositol phosphate metabolism	4
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	3
ghi04120	Ubiquitin mediated proteolysis	2
ghi04814	Motor proteins	2
ghi04820	Cytoskeleton in muscle cells	2
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	7
gma03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03018	RNA degradation	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04141	Protein processing in endoplasmic reticulum	3
ppo00510	N-Glycan biosynthesis	2
ppo00513	Various types of N-glycan biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00190	Oxidative phosphorylation	9
mtr00710	Carbon fixation by Calvin cycle	4
mtr01200	Carbon metabolism	4
mtr00010	Glycolysis / Gluconeogenesis	3
mtr01230	Biosynthesis of amino acids	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	4
sly04141	Protein processing in endoplasmic reticulum	3
sly04130	SNARE interactions in vesicular transport	2
sly03083	Polycomb repressive complex	2
sly00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04120	Ubiquitin mediated proteolysis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	3
sot04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	4
nta00270	Cysteine and methionine metabolism	2
nta00920	Sulfur metabolism	2
nta04122	Sulfur relay system	2
nta03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	4
nta00730	Thiamine metabolism	2
nta01240	Biosynthesis of cofactors	2
nta03018	RNA degradation	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00190	Oxidative phosphorylation	4
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03050	Proteasome	8
osa03040	Spliceosome	2
osa04120	Ubiquitin mediated proteolysis	2
osa03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2
zma03015	mRNA surveillance pathway	2
zma04136	Autophagy - other	2
zma04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04136	Autophagy - other	3
tae04382	Cornified envelope formation	3
tae00310	Lysine degradation	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae04136	Autophagy - other	3
tae04382	Cornified envelope formation	3
tae03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03050	Proteasome	4
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04141	Protein processing in endoplasmic reticulum	7
bdi03060	Protein export	4
bdi00510	N-Glycan biosynthesis	2
bdi00513	Various types of N-glycan biosynthesis	2
bdi04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	3
cre03013	Nucleocytoplasmic transport	2
cre03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

821628

831138

103835726

103855988

103869276

106401806

125603095

106451861

121225310

107889925

107945315

102618037

100784529

100792784

100265941

7470819

7483613

25488987

101265516

101263473

101260874

102596009

102595126

102586245

107787317

107769964

107807908

9272009

100193338

123046458

123105303

123190192

123452562

123431497

123427622

8072335

100837139

100841771

5719484

5719485

The preparation time of this page was 1.8 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	10	3	3	3	1	3	1	2	1	3	3	3	1	1	3	3	1	2	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G20800 (ath-u.5 coexpression data)

Top 50 enrichment test to AT3G20800 (ath-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**