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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-u.5   NRPD2A   nuclear RNA polymerase D2A 
 ath-r.7   NRPD2A   nuclear RNA polymerase D2A 
 ath-e.2   NRPD2A   nuclear RNA polymerase D2A 
 ath-u.5   NRPD2B   nuclear RNA polymerase D2B 
 bra-r.6   103869612   DNA-directed RNA polymerases IV and V subunit 2 
 bna-r.1   106390128   DNA-directed RNA polymerases IV and V subunit 2 
 bna-r.1   106390129   DNA-directed RNA polymerases IV and V subunit 2 
 ghi-r.1   121231997   DNA-directed RNA polymerase D subunit 2b 
 ghi-r.1   107953738   DNA-directed RNA polymerases IV and V subunit 2 
 cit-r.1   102625916   DNA-directed RNA polymerases IV and V subunit 2-like 
 gma-u.5   100815934   DNA-directed RNA polymerases IV and V subunit 2 
 gma-u.5   100779425   DNA-directed RNA polymerases IV and V subunit 2 
 vvi-u.5   100256013   DNA-directed RNA polymerases IV and V subunit 2 
 ppo-u.5   7465421   DNA-directed RNA polymerases IV and V subunit 2 
 mtr-u.5   11436034   DNA-directed RNA polymerases IV and V subunit 2 
 mtr-u.5   25480597   DNA-directed RNA polymerases IV and V subunit 2 
 sly-u.5   778349   RNA polymerase IV subunit RPD2 
 sly-u.5   101249196   DNA-directed RNA polymerases IV and V subunit 2-like 
 sot-r.1   102583937   DNA-directed RNA polymerases IV and V subunit 2-like 
 sot-r.1   102596445   DNA-directed RNA polymerases IV and V subunit 2-like 
 nta-r.1   107802798   DNA-directed RNA polymerases IV and V subunit 2 
 nta-r.1   107760305   DNA-directed RNA polymerases IV and V subunit 2 
 osa-u.5   4337169   DNA-directed RNA polymerases IV and V subunit 2 
 zma-u.5   100037782   required to maintain repression 7 
 zma-u.5   103641221   DNA-directed RNA polymerases IV and V subunit 2 
 tae-r.2   123190832   DNA-directed RNA polymerases IV and V subunit 2 
 tae-r.2   123147607   DNA-directed RNA polymerases IV and V subunit 2 
 tae-r.2   123054983   DNA-directed RNA polymerases IV and V subunit 2 
 hvu-r.1   123428203   DNA-directed RNA polymerases IV and V subunit 2-like 
 sbi-r.1   8068462   DNA-directed RNA polymerases IV and V subunit 2 
 sbi-r.1   8080883   DNA-directed RNA polymerases IV and V subunit 2 
 sbi-r.1   8085255   DNA-directed RNA polymerases IV and V subunit 2 
 bdi-r.1   100832497   DNA-directed RNA polymerases IV and V subunit 2 
 bdi-r.1   100822006   DNA-directed RNA polymerases IV and V subunit 2 

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Top 50 coexpressed genes to NRPD2A (ath-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NRPD2A (ath-u.5 coexpression data)

CoexMap"821960"


athNRPD2A | Entrez gene ID : 821960      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 1 2 2 1 2 1 1 2 2 2 2 1 2 3 1 3 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03020 [list] [network] RNA polymerase (52 genes)
GO BP
GO:0030422 [list] [network] siRNA processing  (31 genes)  IGI IMP  
GO:0031507 [list] [network] heterochromatin formation  (74 genes)  IDA IMP  
GO:0035194 [list] [network] regulatory ncRNA-mediated post-transcriptional gene silencing  (93 genes)  IMP  
GO:0050776 [list] [network] regulation of immune response  (125 genes)  IMP  
GO:0006351 [list] [network] DNA-templated transcription  (160 genes)  IEA  
GO:0031047 [list] [network] regulatory ncRNA-mediated gene silencing  (179 genes)  IMP  
GO:0050832 [list] [network] defense response to fungus  (282 genes)  IMP  
GO CC
GO:0000792 [list] [network] heterochromatin  (13 genes)  IDA  
GO:0000418 [list] [network] RNA polymerase IV complex  (16 genes)  IDA  
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IDA  
GO:0030880 [list] [network] RNA polymerase complex  (53 genes)  IDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0003899 [list] [network] DNA-directed RNA polymerase activity  (9 genes)  ISS  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001189957.1 [sequence] [blastp]
NP_189020.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  cysk_nucl 1,  plas 1,  vacu 1,  cyto 1,  mito 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_001189957.1)
chlo 3,  nucl 2,  cysk_nucl 1,  plas 1,  vacu 1,  cyto 1,  mito 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for NP_189020.2)
Subcellular
localization
TargetP
other 9  (predict for NP_001189957.1)
other 9  (predict for NP_189020.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-u.5
for
NRPD2A
ath-r.7
for
NRPD2A
ath-e.2
for
NRPD2A
ath-u.5
for
NRPD2B
bra-r.6
for
103869612
bna-r.1
for
106390128
bna-r.1
for
106390129
ghi-r.1
for
121231997
ghi-r.1
for
107953738
cit-r.1
for
102625916
gma-u.5
for
100815934
gma-u.5
for
100779425
vvi-u.5
for
100256013
ppo-u.5
for
7465421
mtr-u.5
for
11436034
mtr-u.5
for
25480597
sly-u.5
for
778349
sly-u.5
for
101249196
sot-r.1
for
102583937
sot-r.1
for
102596445
nta-r.1
for
107802798
nta-r.1
for
107760305
osa-u.5
for
4337169
zma-u.5
for
100037782
zma-u.5
for
103641221
tae-r.2
for
123190832
tae-r.2
for
123147607
tae-r.2
for
123054983
hvu-r.1
for
123428203
sbi-r.1
for
8068462
sbi-r.1
for
8080883
sbi-r.1
for
8085255
bdi-r.1
for
100832497
bdi-r.1
for
100822006


Ortholog ID: 5111
Species ath ath bra bna bna ghi ghi cit gma gma vvi ppo mtr mtr sly sly sot sot nta nta osa zma zma tae tae tae hvu sbi sbi sbi bdi bdi
Symbol NRPD2A NRPD2B LOC103869612 LOC106390128 LOC106390129 LOC121231997 LOC107953738 LOC102625916 LOC100815934 LOC100779425 LOC100256013 LOC7465421 LOC11436034 LOC25480597 LOC778349 LOC101249196 LOC102583937 LOC102596445 LOC107802798 LOC107760305 LOC4337169 LOC100037782 LOC103641221 LOC123190832 LOC123147607 LOC123047174 LOC123428203 LOC8068462 LOC8080883 LOC8085255 LOC100832497 LOC100821466
Function* nuclear RNA polymerase D2A nuclear RNA polymerase D2B DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerase D subunit 2b DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 RNA polymerase IV subunit RPD2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 required to maintain repression 7 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2-like DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2 DNA-directed RNA polymerases IV and V subunit 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna04145 Phagosome 2
bna04517 IgSF CAM signaling 2
bna04814 Motor proteins 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03013 Nucleocytoplasmic transport 2
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 3
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
mtr03082 ATP-dependent chromatin remodeling 2
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 5
sly03013 Nucleocytoplasmic transport 3
sly03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 8
sly00520 Amino sugar and nucleotide sugar metabolism 3
sly01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta00220 Arginine biosynthesis 2
nta00240 Pyrimidine metabolism 2
nta00250 Alanine, aspartate and glutamate metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
tae03410 Base excision repair 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi00511 Other glycan degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 821960 821334 103869612 106390128 106390129 121231997 107953738 102625916 100815934 100779425 100256013 7465421 11436034 25480597 778349 101249196 102583937 102596445 107802798 107760305 4337169 100037782 103641221 123190832 123147607 123047174 123428203 8068462 8080883 8085255 100832497 100821466
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